View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_high_5 (Length: 453)
Name: NF7933_high_5
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 121 - 435
Target Start/End: Complemental strand, 48527288 - 48526974
Alignment:
| Q |
121 |
tctaacatattttaatcatgaaagatacattaaatgaataatttgggttaatgtgcataattttattgaattgaatgtaggtggacctatctgggggata |
220 |
Q |
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| T |
48527288 |
tctaacatattttaatcatgaaagatacattaaatgaataatttgggttaatgtgcataattttattgaattgaatgtaggtggacctatctgggggata |
48527189 |
T |
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| Q |
221 |
ttatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagca |
320 |
Q |
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| T |
48527188 |
ttatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaatattttacaaaacagaatttgaagca |
48527089 |
T |
|
| Q |
321 |
acaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttgtagaagaaacaaattatatgttgaggtagggg |
420 |
Q |
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| T |
48527088 |
acaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagttctagaagaaacaaattatatgttgaggtagggg |
48526989 |
T |
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| Q |
421 |
acccagaggaagatc |
435 |
Q |
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| T |
48526988 |
acccagaggaagatc |
48526974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 180 - 426
Target Start/End: Complemental strand, 7222612 - 7222368
Alignment:
| Q |
180 |
attttattgaattgaatgtaggtggacctatctgggggatattatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacat |
279 |
Q |
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| T |
7222612 |
attttattgaattgaat--aggttgacctatcaggaggatattatgatgccggggacaatgtgaaatatgggctaccaatggcattcacagttactacat |
7222515 |
T |
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| Q |
280 |
tatcatgggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaa |
379 |
Q |
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| T |
7222514 |
tatcatgggcagcaatattttataaaacagaatttgaagcaactaatgaaatgggaaatattcaaaatgccattagatggggtactgattattttctgaa |
7222415 |
T |
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| Q |
380 |
agctagttgtagaagaaacaaattatatgttgaggtaggggacccag |
426 |
Q |
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| T |
7222414 |
aactagttcccaaagaaatagattatatgtagaggtaggggacccag |
7222368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 48527547 - 48527430
Alignment:
| Q |
1 |
atcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacgacggcaaactcgct |
100 |
Q |
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| T |
48527547 |
atcccttatattcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacgacggcaaactcgct |
48527448 |
T |
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| Q |
101 |
aatgtatctttctttttc |
118 |
Q |
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| T |
48527447 |
aatgtatctttatttttc |
48527430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 7222847 - 7222740
Alignment:
| Q |
11 |
ttcttagaggcacaaagatcaggaaaactccctccaaataacagggttccttggagaggagactcagctgtcgacgacggcaaactcgctaatgtatctt |
110 |
Q |
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||||||||||| ||||||||||| ||||||||||| | ||| ||||| |||||||||||||||||||| || || || || ||||||| |||||||| || |
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| T |
7222847 |
ttcttagaggcgcaaagatcagggaaactccctcccagtaatagggtcccttggagaggagactcagcagtggatgatggaaaactcgataatgtatgtt |
7222748 |
T |
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| Q |
111 |
tctttttc |
118 |
Q |
| |
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|||||||| |
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| T |
7222747 |
tctttttc |
7222740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 415
Target Start/End: Original strand, 50304083 - 50304211
Alignment:
| Q |
287 |
ggctgcaatattttacaaaacagaatttgaagcaacaaaggaaatgggaaatattcaagatgcaatcaaatggggaacagattattttttaaaagctagt |
386 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| || |||||||| ||| |||||||| | ||| |||| |
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| T |
50304083 |
ggctgcaatattttacaaaactgaatttgaagcaacaaatgaaataggaaatattcaaaatgttattaaatggggtacatattattttctgaaaactagc |
50304182 |
T |
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| Q |
387 |
tgtagaagaaacaaattatatgttgaggt |
415 |
Q |
| |
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| T |
50304183 |
tccggaagaaatagattatatgttaaggt |
50304211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 50303780 - 50303873
Alignment:
| Q |
202 |
tggacctatctgggggatattatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgtgactacattatcatgggctgcaat |
295 |
Q |
| |
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||||| ||||||| |||||||| |||| || || |||||||||||| || |||||||||||||||| | |||||||||| |||||||||||| |
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| T |
50303780 |
tggacttatctggaggatattacgatgttggggacaatgtgaaatataggttaccaatggcattcacaattactacattattatgggctgcaat |
50303873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 41915316 - 41915365
Alignment:
| Q |
222 |
tatgatgcaggagataatgtgaaatatgggctaccaatggcattcactgt |
271 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||||||| ||||| |
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| T |
41915316 |
tatgatgcaggggataatgtgaaatttgggttaccaatggcatttactgt |
41915365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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