View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_high_6 (Length: 420)
Name: NF7933_high_6
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 177 - 399
Target Start/End: Complemental strand, 7748067 - 7747839
Alignment:
| Q |
177 |
taataaattacagaaaactctcttctagctttcacaactaaggnnnnnnngttaatcagcattaacaacgaaacataa---------ccagtatcaacaa |
267 |
Q |
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| T |
7748067 |
taataaattacagaaaactct--tctagcattcacaaataaggaaataaatttaatcaacattaacaacgaaacataagttacataaccagtatcaagaa |
7747970 |
T |
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| Q |
268 |
caaaaagattgaaactatagctagaatagaaactatgcttaaagcttaagctccaaagttaatctttatgaagattcagtccaaatttgtatcagctaaa |
367 |
Q |
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| T |
7747969 |
cataaagattgaaactatagctagaatagaa-ctatgcttaaagcttaagctccaaagttgttctttatgaagattcagtccaaatttgtaacagctaaa |
7747871 |
T |
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| Q |
368 |
tatatatctaaatttggtcttcatcaaacaat |
399 |
Q |
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| T |
7747870 |
tatatatccaaatttggtcttcatcaaacaat |
7747839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 7748236 - 7748130
Alignment:
| Q |
7 |
gagtgagatgaaggggagggcttccctccactggctttgtcatcaagtgtgttgatggcaatgacgaaaccacccgcacatcattggcaagaacattctt |
106 |
Q |
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| T |
7748236 |
gagtgacatgaaggggagggcttccctccactggctttgtcatcaagtgtgttgatggcaatgacgaaaccacccgcacatcattggcaagaacattctt |
7748137 |
T |
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| Q |
107 |
gaagtgc |
113 |
Q |
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| T |
7748136 |
gaagtgc |
7748130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 8178178 - 8178095
Alignment:
| Q |
14 |
atgaaggggagggcttccctccactggctttgtcatcaagtgtgttgatggcaatgacgaaaccacccgcacatcattggcaag |
97 |
Q |
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| T |
8178178 |
atgaagtggaggtcttccttctactggccttgtcattatgtgtgttgatggcaatgctgaaaccactctcacatcatttgcaag |
8178095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 42937027 - 42936988
Alignment:
| Q |
360 |
cagctaaatatatatctaaatttggtcttcatcaaacaat |
399 |
Q |
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| T |
42937027 |
cagctaaatatatatccaaatttggtcttcattaaacaat |
42936988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 2808220 - 2808291
Alignment:
| Q |
298 |
aactatgcttaaagcttaagctccaaagttaatctttatgaagattcagtccaaatttgtatcagctaaatat |
370 |
Q |
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| T |
2808220 |
aactatgcttaaa-cttaggctccatggttgttctttatgaagattcagtctaaattcgtaaaagctaaatat |
2808291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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