View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_low_10 (Length: 262)
Name: NF7933_low_10
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7979599 - 7979844
Alignment:
| Q |
1 |
aaaacataagagtaaaaggaagcaaggaacaatagaaacctata-----actcaccattacattctcttagatttataagtcttgccaatagctactccc |
95 |
Q |
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| T |
7979599 |
aaaacataagagtaaaaggaagcaaggaacaatagaaacctataatataactcaccattacattctcttagatttataagtcttgccaatagctactccc |
7979698 |
T |
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| Q |
96 |
ataacaaaagccgctgccatagctccaaacacaccaacgaagattttgagattgggctttttcttaggcccctacgataatttcattaaggttaaggaaa |
195 |
Q |
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| T |
7979699 |
ataacaaaagccgcagccatagctccaaacacaccaacgaagattttgagattgggctttttcttaggcccctacgataatttcattaaggttaaggaaa |
7979798 |
T |
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| Q |
196 |
gtgtcaaaaatacaataatgattaattcattttggtaccagactta |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979799 |
gtgtcaaaaatacaataatgattaattcattttggtaccagactta |
7979844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 7998188 - 7998295
Alignment:
| Q |
41 |
tataactcaccattacattctcttagatttataagtcttgccaatagctactcccataacaaaagccgctgccatagctccaaacacaccaacgaagatt |
140 |
Q |
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||||||| |||||||||||| || |||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||||||||||| | || |
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| T |
7998188 |
tataacttaccattacattccctgagatttataaactacaccaacagctactcccataaaaaaagatgctgccacagctccaaacacaccaacgatggtt |
7998287 |
T |
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| Q |
141 |
ttgagatt |
148 |
Q |
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|||||||| |
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| T |
7998288 |
ttgagatt |
7998295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 24224609 - 24224669
Alignment:
| Q |
88 |
ctactcccataacaaaagccgctgccatagctccaaacacaccaacgaagattttgagatt |
148 |
Q |
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|||||| ||||| |||||| |||| || ||||||||||||| |||||| | |||||||||| |
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| T |
24224609 |
ctactcacataataaaagctgctgtcacagctccaaacacatcaacgatggttttgagatt |
24224669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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