View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_low_16 (Length: 228)
Name: NF7933_low_16
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 3104350 - 3104544
Alignment:
| Q |
14 |
gtttggtgtttccaacatagtgaagttactaaagaatattaaagacgacgatgtaagagccgatgcaatggattcaattatttttgagtcggatattcgt |
113 |
Q |
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| T |
3104350 |
gtttggtgtttccaacatagtgaagttactaaagaatattaaagacaacgatgtaagagccgatgcaatggattcaattatttttgagtcggatattcgt |
3104449 |
T |
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| Q |
114 |
gcagaatttcccgttcatggatgtgttggtgttattcaccaatatttaggtttgatacgcgagtctacggaagagttaaatcgcacacaaagttt |
208 |
Q |
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| T |
3104450 |
gcagaattccccgttcatggatgtgttggtgttattcatcaatatttaggtttgatacgcgagtctacggaagagttaaatcgcacacaaagttt |
3104544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 3080687 - 3080614
Alignment:
| Q |
78 |
gcaatggattcaattatttttgagtcggatattcgtgcagaatttcccg-ttcatggatgtgttggtgttattca |
151 |
Q |
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| T |
3080687 |
gcaatgaaatcaattattgttgagtcgaaaattcgtgca-aatttcccaattcatggatgtcttggtgttattca |
3080614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 36915192 - 36915244
Alignment:
| Q |
97 |
ttgagtcggatattcgtgcagaatttcccgttcatggatgtgttggtgttatt |
149 |
Q |
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| T |
36915192 |
ttgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttatt |
36915244 |
T |
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