View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_low_3 (Length: 506)
Name: NF7933_low_3
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 2288791 - 2289161
Alignment:
| Q |
15 |
aaaaacaagagtaaatcgtttttgtgcgcaaaacagggatatattgaaatttagagaggtttaaaagtgggtgcatgaaggcaaaatgtataaagaaaat |
114 |
Q |
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| T |
2288791 |
aaaaacaagagtaaatcgtttttgtgcgcaaaacagggatatattgaaatttagagaggtttaaaagtgggtgcatgaaggcaaaatgtataaagaaaat |
2288890 |
T |
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| Q |
115 |
gggaaccaaccaagagatatagggagaaagcgaatgcagaagaaaaataaaggaatgaagagggagtatatagctataggcaagcgtagtgccatggtct |
214 |
Q |
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| T |
2288891 |
gggaaccaaccaagagatatagggagaaagcgaatgcagaagaaaaataaaggaatgcagagggagcatata------ggcaagcgtagtgccatggtct |
2288984 |
T |
|
| Q |
215 |
ccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgttattctgaatcagtttaatttattcaaattttcc |
314 |
Q |
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| T |
2288985 |
ccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgttattctgaatcagtttaatttattcaaattttcc |
2289084 |
T |
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| Q |
315 |
tgaattctcattactgatttttgaattttgtaagtgtatgttgatatagtttctcttttctctcattttcaatataa |
391 |
Q |
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| T |
2289085 |
tgaattctcattactgatttttgaattttgtaagtgtatgttgatttagtttctcttttctctcattttcaatataa |
2289161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 2255731 - 2255391
Alignment:
| Q |
15 |
aaaaacaagagtaaatcgtttttgtgcgcaaaacagggatatattgaaatttagagaggtttaaaagtgggtgcatgaaggcaaaatgtataaagaaaat |
114 |
Q |
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| T |
2255731 |
aaaaacaagagtggatcgttttggtgcgtaaaatagggatatagggaaacttagagaggattaaaagcgggtagatgaaggaaaaatgtaaaacaaaaat |
2255632 |
T |
|
| Q |
115 |
gggaaccaaccaagagatatagggagaaagcgaatgcagaagaaaaataaaggaatgaagagggagtatatagctataggcaagcgtagtgccatggtct |
214 |
Q |
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||||||||| ||||| ||||||||||| | ||||||||||| || |||||||||| | ||||||||||||||| |||| ||||||||||||||| |
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| T |
2255631 |
gggaaccaaacaagatatatagggagagaacgaatgcagaacaagaataaaggaaggcagagggagtatataga------caagtgtagtgccatggtct |
2255538 |
T |
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| Q |
215 |
ccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgtt--attctgaatcagtttaatttattcaaatttt |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||| |
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| T |
2255537 |
ccccattgaaactaggtgaagaaggtaagttaggatttggttttcattctctctcttgtgatatgttaaattctgaatcagttaaatttattccaatttt |
2255438 |
T |
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| Q |
313 |
cctgaattctcattactgatttttgaattttgtaagtgtatgttgat |
359 |
Q |
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| T |
2255437 |
cctgaattctcattttttatttttgaattttgtatgtgtatgttgat |
2255391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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