View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7933_low_4 (Length: 461)
Name: NF7933_low_4
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7933_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 445
Target Start/End: Original strand, 17196790 - 17197199
Alignment:
| Q |
20 |
gttccaaaagtgtgcatcatgaaccccttctaacaagagatcagtcgaagatttcaatcttgattctctgcctgcttagccacatattgtaatttccttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17196790 |
gttccaaaagtgtgcatcatgaaccccttctaacaagagatcagtcgaagatttcaatcttgattctctgcctgcttagccacatattgtaatttccttt |
17196889 |
T |
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| Q |
120 |
gcgcttcacttcttttgcactttttcggttgaatcgtcattgatttttctttagcttaacattgcagatcccagcactggatgttgaaacaagcttgaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17196890 |
gcgcttcacttcttttgcactttttcggttgaattgtcattgatttttctttagcttaacattgcaaatcccagcactggatgttgaaacaagcttgaca |
17196989 |
T |
|
| Q |
220 |
ctaatgaataccaaatgttgtaatctacttattttcttttgagtttatcattctttttctaatatacacagctctggggattatttatgcccaatctaga |
319 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17196990 |
cta----------------gtaatctactttttttcttttgagtttatcattctttttctaatatacacagctctggggattatttatgctcaatctaga |
17197073 |
T |
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| Q |
320 |
atttgattctctgcttgttaatttgaatatttacttccttatttgacctagattaaacattgatgcactatagaaaaacattgcagaatttaatctccat |
419 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17197074 |
atttgattctctgcttgttaatttgaatatatacttccttatttgacctagattaaacattgatgcactatagaaaaacattgcagaatttaatctccat |
17197173 |
T |
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| Q |
420 |
gtgattattgatctatgtactttctt |
445 |
Q |
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| T |
17197174 |
gtgattattgatctatgtactttctt |
17197199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 17183612 - 17183381
Alignment:
| Q |
20 |
gttccaaaagtgtgcatcatgaaccccttctaacaagagatcagtcgaagatttcaatcttgattctctgcctgcttagccacatattgtaatttccttt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17183612 |
gttccaaaagtgtgcatcatgaaccccttctaacaagagatcagtcgaagatttcaatcttgattctctgcctgcttagccacatattgtaatttccttt |
17183513 |
T |
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| Q |
120 |
gcgcttcacttcttttgcactttttcggttgaatcgtcattgatttttctttagcttaacattgcagatcccagcactggatgttgaaacaagcttgaca |
219 |
Q |
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| ||||||||||| ||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17183512 |
gtgcttcacttctcttgtgctttttcgattgaatcatcattgatttttctgtagcttaacattgcagatcccagcactggatgttgaaacaagcttgaca |
17183413 |
T |
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| Q |
220 |
ctaatgaataccaaatgttgtaatctacttat |
251 |
Q |
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||||||||||||||||| | |||||| ||||| |
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| T |
17183412 |
ctaatgaataccaaatgctctaatctgcttat |
17183381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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