View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7933_low_8 (Length: 303)

Name: NF7933_low_8
Description: NF7933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7933_low_8
NF7933_low_8
[»] chr7 (8 HSPs)
chr7 (58-287)||(2335866-2336095)
chr7 (58-239)||(2319550-2319732)
chr7 (1-57)||(2329350-2329406)
chr7 (1-57)||(2337249-2337305)
chr7 (65-204)||(1087053-1087195)
chr7 (65-209)||(1594547-1594694)
chr7 (138-228)||(3957057-3957147)
chr7 (138-210)||(2327802-2327874)
[»] scaffold0491 (2 HSPs)
scaffold0491 (58-204)||(7777-7923)
scaffold0491 (137-209)||(3232-3304)
[»] chr8 (4 HSPs)
chr8 (58-209)||(18751401-18751555)
chr8 (137-209)||(18741426-18741498)
chr8 (137-209)||(18746390-18746462)
chr8 (137-209)||(18755597-18755669)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 58 - 287
Target Start/End: Complemental strand, 2336095 - 2335866
Alignment:
Q  58 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 157  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2336095 actattcattatagcatttgcttccatttgaagttgagatttcattgtggcagattgagtacctacaatgaaaatccagataagaagaaagaccatcctc 2335996  T
Q  158 atttttggaccataggaattggaaactaaatattttgtcaagttcattttttgagatctaatgaattgcatacattgttctaatatgtatatagaacatt 257  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2335995 atttttggaccataggaattggaaactaaatattttgttaagttcattttttgagatctaatgaatttcatacattgttctaatatgtatatagaacatt 2335896  T
Q  258 tataatggtgtcattctcacagaccaatat 287  Q
    ||||||||||||||||||||||||||||||    
T  2335895 tataatggtgtcattctcacagaccaatat 2335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 58 - 239
Target Start/End: Complemental strand, 2319732 - 2319550
Alignment:
Q  58 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 157  Q
    |||||| | ||| |||||||| | ||| ||| |||||||| ||| || |||||||| |||||| |||||||||  ||| ||||||||||||||||||| |    
T  2319732 actatttaatatcgcatttgcttccatatgaggttgagatgtcactgaggcagattgagtacccacaatgaaaggccaaataagaagaaagaccatccac 2319633  T
Q  158 atttttggaccataggaattggaaactaaatattttgtcaagttcatt-ttttgagatctaatgaattgcatacattgttcta 239  Q
    |||||  |||||||| ||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||| |||||    
T  2319632 attttctgaccatagaaattggaaactaagtattttatcaagttcattttttttagatctaatgaattgcttacattattcta 2319550  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2329406 - 2329350
Alignment:
Q  1 tgagaaggctaagatcagaatcaaaaggatagaaagaacaatgacaacatcatagtt 57  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2329406 tgagaaggctaagatcagaatcaaaaggataggaagaacaatgacaacatcatagtt 2329350  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2337305 - 2337249
Alignment:
Q  1 tgagaaggctaagatcagaatcaaaaggatagaaagaacaatgacaacatcatagtt 57  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2337305 tgagaaggctaagatcagaatcaaaaggataggaagaacaatgacaacatcatagtt 2337249  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 1087195 - 1087053
Alignment:
Q  65 attatagcatttgcgttcatttgaagttgagatttcattgtggcag---attaagtacctacaatgaaaatccagataagaagaaagaccatcctcattt 161  Q
    |||||||||||||| | |||||||||||||||| |||| |||||||   ||| ||| || ||||| ||| | || |||| ||||||| | |||| |||||    
T  1087195 attatagcatttgcttccatttgaagttgagatgtcatagtggcagcagattgagttcccacaatcaaactgcaaataataagaaaggcaatccacattt 1087096  T
Q  162 ttggaccataggaattggaaactaaatattttgtcaagttcat 204  Q
    ||||| || || |||| |||||||||||||||||  |||||||    
T  1087095 ttggatcaaagaaatttgaaactaaatattttgtgtagttcat 1087053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 1594694 - 1594547
Alignment:
Q  65 attatagcatttgcgttcatttgaagtt---gagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctcattt 161  Q
    ||||| |||||||| | |||||||||||   ||||| || || ||||||||| ||| || ||| | | | | || |||||||||||| | ||| ||||||    
T  1594694 attattgcatttgcttccatttgaagtttatgagatgtcgttttggcagattgagttcccacagtcagactgcaaataagaagaaaggcaatcatcattt 1594595  T
Q  162 ttggaccataggaattggaaactaaatattttgtcaagttcatttttt 209  Q
    |||||||| ||||||| |||| |||||||||| |||||||||| ||||    
T  1594594 ttggaccaaaggaatttgaaattaaatattttctcaagttcatatttt 1594547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 3957057 - 3957147
Alignment:
Q  138 taagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcattttttgagatctaatgaattgcat 228  Q
    |||||||||| | | ||| ||||||||||| ||||  ||| |||   ||||||||||||||||||||||||||||||  ||||||||||||    
T  3957057 taagaagaaaaatcttccacatttttggactatagatattagaacaaaaatattttgtcaagttcattttttgagattgaatgaattgcat 3957147  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 2327874 - 2327802
Alignment:
Q  138 taagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcattttttg 210  Q
    ||||||||||||||| || ||||||||||  || | |||| | || |||||||||||||||||||||||||||    
T  2327874 taagaagaaagaccacccacatttttggaatattgaaattaggaaataaatattttgtcaagttcattttttg 2327802  T

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Target: scaffold0491 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 7777 - 7923
Alignment:
Q  58 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 157  Q
    |||||| | |||||||||||| | |||||||||||||||| ||||||||||||||| ||| ||  |||  |||   || ||||||||||||||||||| |    
T  7777 actatttaatatagcatttgcttccatttgaagttgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatccac 7876  T
Q  158 atttttggaccataggaattggaaactaaatattttgtcaagttcat 204  Q
    |||||||||||| || |||| |||| |||||||||| ||||| ||||    
T  7877 atttttggaccaaagaaatttgaaattaaatattttttcaagctcat 7923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 3232 - 3304
Alignment:
Q  137 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcatttttt 209  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| |||||||||| ||||    
T  3232 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcatatttt 3304  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 18751401 - 18751555
Alignment:
Q  58 actattcattatagcatttgcgttcatttgaagttga---gatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatc 154  Q
    |||||| | |||||||||||| | |||||||||||||   ||| ||||||||||||||| ||| ||  |||  |||   || ||||||||||||||||||    
T  18751401 actatttaatatagcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatc 18751500  T
Q  155 ctcatttttggaccataggaattggaaactaaatattttgtcaagttcatttttt 209  Q
    | ||||||||||||| || |||| ||||||||||||||| |||||||||| ||||    
T  18751501 cacatttttggaccaaagaaatttgaaactaaatattttatcaagttcatatttt 18751555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 18741426 - 18741498
Alignment:
Q  137 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcatttttt 209  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| |||||||||| ||||    
T  18741426 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcatatttt 18741498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 18746390 - 18746462
Alignment:
Q  137 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcatttttt 209  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| |||||||||| ||||    
T  18746390 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcatatttt 18746462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 18755597 - 18755669
Alignment:
Q  137 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcatttttt 209  Q
    |||||||||||| |  ||| ||| |||||||||  | |||| |||||||||||||||||||||||| ||||||    
T  18755597 ataagaagaaaggcattccacatatttggaccaatgaaatttgaaactaaatattttgtcaagttcttttttt 18755669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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