View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7934_low_1 (Length: 1011)
Name: NF7934_low_1
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 12 - 595
Target Start/End: Complemental strand, 27775354 - 27774770
Alignment:
| Q |
12 |
cattattctatcgggcaaatgttatttcagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgatt |
111 |
Q |
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| T |
27775354 |
cattattctatcgggcaaatgttattccagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgatt |
27775255 |
T |
|
| Q |
112 |
agagataataattgtgatggatatagatgcaattaattctaaaataacaaactaaactttcaagacaaaacataaaaggtgggagacaatacatgtttaa |
211 |
Q |
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| T |
27775254 |
agagataataattgtgatggatatagatgcaattaattctaaaataacaaactaaactttaaagacaaaacataaaaggtgggagacaatacatgtttaa |
27775155 |
T |
|
| Q |
212 |
gctgcagaagaattgctgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagttccatg |
311 |
Q |
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| T |
27775154 |
gctgcagaagaattgttgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagttccatc |
27775055 |
T |
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| Q |
312 |
tctttttactacaaaaagtgctagttcatgttcgttccatctgcttaatccacgtgccgatttcctcaaagtgtctaccttcgctttgaggaaattggct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775054 |
tctttttactacaaaaagtgctagttcatgttcgttccatttgcttaatccacgtgccgatttcctcaaagtgtctaccttcgctttgaggaaattggct |
27774955 |
T |
|
| Q |
412 |
cgggaattaagcttatgaaacgagaattatctagcacttcttctgctacaaaggggtgagactgcagctatgggaactcttgttcaatttcttggtgtga |
511 |
Q |
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| T |
27774954 |
cgggaattaagcttatgaaacgagaattatctagcactttttctgctacaaaggggtgagactgcagctatgggatttcttgttcaatttcttggtgtga |
27774855 |
T |
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| Q |
512 |
ttcagtttgaacatacgccatgcacataattcaatatgatatgtgacct-aactctttgtgtagcttatctatcttatcacggta |
595 |
Q |
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| T |
27774854 |
ttcagtttgaacatacgccatgcacataattcaatatgatatgtgacctaaactctttgtgtagcttatctatcttatcacggta |
27774770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 631 - 754
Target Start/End: Complemental strand, 27774734 - 27774611
Alignment:
| Q |
631 |
ccaagaccttgttcccctctgcctcccaaatgccggctttatatattgtctttgttctgctgacgcacaaatttcaggttgtgaggtaatagttatatat |
730 |
Q |
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| T |
27774734 |
ccaagaccttgttcccctctgcctcccaaatgccggctttatatattgtctttgttctgctgacgcacaaatttcaggttgtgaggtaatagttatatat |
27774635 |
T |
|
| Q |
731 |
aattagtaaagctaacaactagaa |
754 |
Q |
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| T |
27774634 |
aattagtaaagctaacaactagaa |
27774611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 27764453 - 27764322
Alignment:
| Q |
47 |
gagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgtgatggatatagatgcaatta |
146 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| || ||||||||| | |
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| T |
27764453 |
gagctcaacggaataggctaaaagattatttcagcatcttgattatttagatgttaagtaagattagagatattaatagtgatgaattgagatgcaatca |
27764354 |
T |
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| Q |
147 |
attctaaaataacaaactaaactttcaagaca |
178 |
Q |
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| T |
27764353 |
attctaaaataccaaaccaaactttcaagaca |
27764322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 278 - 393
Target Start/End: Complemental strand, 27771645 - 27771530
Alignment:
| Q |
278 |
gttcagcaagagctcccatagctgaagttccatgtctttttactacaaaaagtgctagttcatgttcgttccatctgcttaatccacgtgccgatttcct |
377 |
Q |
| |
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|||| |||||||||||||| |||| || ||| ||||| || || | |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
27771645 |
gttccgcaagagctcccatggctgctgtcccacctctttgtaatagagaaagtgctagttcatgttcgttccatctgcttaatccatgtgccaatttcct |
27771546 |
T |
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| Q |
378 |
caaagtgtctaccttc |
393 |
Q |
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| T |
27771545 |
caaactatctaccttc |
27771530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 395 - 493
Target Start/End: Original strand, 27802129 - 27802226
Alignment:
| Q |
395 |
ctttgaggaaattggctcgggaattaagcttatgaaacgagaattatctagcacttcttctgctacaaaggggtgagactgcagctatgggaactcttg |
493 |
Q |
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||||||||||||||||| |||||||||| |||| ||||||||| | |||||| ||| |||||||||||| |||| |||||||||||||||| |||||| |
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| T |
27802129 |
ctttgaggaaattggcttgggaattaagtgtatggaacgagaatgaactagcatttc-tctgctacaaagaggtgggactgcagctatgggagctcttg |
27802226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 27799814 - 27799689
Alignment:
| Q |
66 |
aaaagattatttcagcatcttgattatttagatgt-----taagtatgattagagataataattgtgatggatatagatgcaattaattctaaaataaca |
160 |
Q |
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| T |
27799814 |
aaaagattagtttagcatcttgattatttagatggagtaattagtatgattagagatgataacagagatagactaagatgcaattaattctaaaatacca |
27799715 |
T |
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| Q |
161 |
aactaaactttcaagacaaaacataa |
186 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
27799714 |
aactaaactttcaagagaaaacataa |
27799689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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