View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7934_low_11 (Length: 283)
Name: NF7934_low_11
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 2103058 - 2103330
Alignment:
| Q |
16 |
gttctaactctgcagctgatgctcaagcaaatcgcggcaaaaatcttggaggttagacttcacaagacttttctgagttcttataggtttcaattctttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2103058 |
gttctaactctgcagctgatgctcaagcaaatcgtggcaaaaatcttggaggttagacttcacaagacttttctgagttcttattggtttcaattctttg |
2103157 |
T |
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| Q |
116 |
atttcctggtagatgaaatagcaatgacttacagccaaagttgctttnnnnnnncttctttcacttgtgtttggttgc---------------------- |
193 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
2103158 |
atttcctagtagatgaaatagcaatgacttacagccaaagttgctttaaaaaaacatctttcacttgtgtttggttgcaatggatatactgtcattaaga |
2103257 |
T |
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| Q |
194 |
aatattgtttacaatttattttcatatttgtatttggaaggggaacacaagttttaatgcatcctatattttt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2103258 |
aatattgtttacaatttattttcatatttgtatttggaaggggaacacaagttttaatgcattctatattttt |
2103330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 39182581 - 39182404
Alignment:
| Q |
16 |
gttctaactctgcagctgatgctcaagcaaatcgcggcaaaaatcttggaggttagacttcacaagacttttctgagttcttataggtttcaattctttg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39182581 |
gttctaactctgcagctgatgctcaagcaaatcgcggcaaaaatcttggaggttagacttcacaagacttt--tgagttcttataggtttcaattctttg |
39182484 |
T |
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| Q |
116 |
atttcctggtagatgaaatagcaatgacttacagccaaagttgctttnnnnnnncttctttcacttgtgtttggttgcaat |
196 |
Q |
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|||| || |||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
39182483 |
attttctagtagatgaaatagcaa-gacttacagccaaagctgctttaaacaaacatctttcacttgtgtttggttgcaat |
39182404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 39182399 - 39182371
Alignment:
| Q |
238 |
acacaagttttaatgcatcctatattttt |
266 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39182399 |
acacaagttttaatgcatcctatattttt |
39182371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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