View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7934_low_12 (Length: 272)
Name: NF7934_low_12
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 1079002 - 1078743
Alignment:
| Q |
1 |
tttacattttgatacatttacaaaagtggttttatcaatttatatttagatagtttgaatcacaattggttttataatatataattgccacttttagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| ||| || |
|
|
| T |
1079002 |
tttacattttgatacatttacaaaagtggttttatcaatttatgtttagatagtttgaatcacaattggttttataatatatgattaccacttatagtat |
1078903 |
T |
|
| Q |
101 |
gtgtttggatccacattaagtccattattctcgcttccaaagcattctcaccatgatttttgctaaatccaaacacacacctcataagctagaaatttta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1078902 |
gtgtttgaatccacattaagtccattattctcgcttccaaagcattctcaccatgatttttgctaaatccaaacacacacctcataagctagaaatttta |
1078803 |
T |
|
| Q |
201 |
cattttaagtagaattgcttttccaaccagaatgagccaatcactataaatttgtgttca |
260 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1078802 |
cattttaagtagaattgcttttccaactagaatgagccaatcactataaatttgtgttca |
1078743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University