View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7934_low_2 (Length: 854)
Name: NF7934_low_2
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 15 - 836
Target Start/End: Complemental strand, 35191709 - 35190888
Alignment:
| Q |
15 |
aatatatttcccataaacatatgccaaaactatatacatcacatttcctgttataggggttgccatttaaaacctgtaaaccatcattcacccatttatc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191709 |
aatatatttcccataaacatatgccaaaactatatacatcacatttcctgttataggggttgccatttaaaacctgtaaaccatcattcacccatttatc |
35191610 |
T |
|
| Q |
115 |
aaataagttacaagtcaattgcttagactttctttttgatcaaatgaaagcccttttgtgacctttttcttttcatattggcacaatattttatggtaaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
35191609 |
aaataagttaaaagtcaattgcttagactttctttttgatcaaatgaaagcccttttgtgacctttttcttttcatatcggcacaatattttatgttaaa |
35191510 |
T |
|
| Q |
215 |
ggtttcaagggaaactgactacaaacctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35191509 |
ggtttcaagggaaactgactacaaacctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcatttggattcgacgcttcaatacgtgcaa |
35191410 |
T |
|
| Q |
315 |
cgccaaaatcagcaattttaacggtgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttctgagagtgaagatagttcag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191409 |
cgccaaaatcagcaattttaacggtgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttctgagagtgaagatagttcag |
35191310 |
T |
|
| Q |
415 |
actgcatatccaagtgaattctatttgagcgatcgaaacatattatgagtcggtctttattctcgacaagtactaaatcactattacattgagtgaaaaa |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
35191309 |
actgcatatccaagtgaattctatttgagcgatcgaaacatgttatgagtcggtctttattctcgacaagtactaaatcactattacattgagtaaaaaa |
35191210 |
T |
|
| Q |
515 |
ttcaggaaaagaaaaggaagatgaataccctcttgccatatcaagtgccagctggatgacaaccttaaaagctaacttcctcctcctatttttgattaag |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35191209 |
ttcaggaaaagaaaaggaagatgaataccctcttgccatatcaagtgccagctggatgacaaccttaaaagctaacttcctcctcctatttttgattaag |
35191110 |
T |
|
| Q |
615 |
aatgatttcagtgcacctccaggaagatactcaacaaccacacagcagatattgtttggcatgctaattagaccactgtcagtttgtatctgtaattcag |
714 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35191109 |
aatgatttcaatgcacctccaggaagatactcaacaaccacacagcagatattgtttggcatgctaattagaccactgtcagtttgtatctgtaattcag |
35191010 |
T |
|
| Q |
715 |
atgaccccattgttgcccctataaactaaacacggagagnnnnnnntgttacgagtcttgcattaattagattaaagtgctcagggtggtgctggtactt |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35191009 |
atgaccccattgttgcccctataaactaaacacggagagaaaaaaatgttacgagtctcgcattaattagattaaagtgctcagggtggtgctggtactt |
35190910 |
T |
|
| Q |
815 |
aaaactgaaagcatgttgtcat |
836 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
35190909 |
aaaactgaaagcatgttgtcat |
35190888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 232 - 408
Target Start/End: Complemental strand, 43974425 - 43974249
Alignment:
| Q |
232 |
actacaaacctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaacgccaaaatcagcaatt |
331 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| || || |||||||||||||| ||||||||||| ||||| || | |||||||| ||||||||||||||| |
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| T |
43974425 |
actacacacctctggagccatataaccaagggttccggtctccccggtcatatcattaggatttgacgcctcgactcgtgcaaccccaaaatcagcaatt |
43974326 |
T |
|
| Q |
332 |
ttaacggtgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttctgagagtgaagata |
408 |
Q |
| |
|
||||| ||||| | |||||||| ||||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
43974325 |
ttaactgtgcgggtcttatccagcagcatgttttcggtcttcacatctctgtgaacaatcttctgagagtgaagata |
43974249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 540 - 746
Target Start/End: Complemental strand, 43974159 - 43973953
Alignment:
| Q |
540 |
taccctcttgccatatcaagtgccagctggatgacaaccttaaaagctaacttcctcctcctatttttgattaagaatgatttcagtgcacctccaggaa |
639 |
Q |
| |
|
||||||||||| | |||||| ||||||| |||||||||||||||||||| ||||||||||| || || |||| | |||||||||||| |||||||| || |
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|
| T |
43974159 |
taccctcttgctaaatcaagcaccagctgtatgacaaccttaaaagctaatttcctcctcctgttctttattaggtatgatttcagtgtacctccagcaa |
43974060 |
T |
|
| Q |
640 |
gatactcaacaaccacacagcagatattgtttggcatgctaattagaccactgtcagtttgtatctgtaattcagatgaccccattgttgcccctataaa |
739 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| ||||||||| |||||||||| | |||||||| ||||| ||||| | || ||||| ||||| || ||||| |
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|
| T |
43974059 |
gatactccacaacaacacaacagatattgcttggcatgccaattagaccagtatcagtttgaatctgcaattctgcagatcccatagttgctccaataaa |
43973960 |
T |
|
| Q |
740 |
ctaaaca |
746 |
Q |
| |
|
||||||| |
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|
| T |
43973959 |
ctaaaca |
43973953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 43975108 - 43975038
Alignment:
| Q |
23 |
tcccataaacatatgccaaaactatatacatcacatttcctgttataggggttgccatttaaaacctgtaa |
93 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
43975108 |
tcccataaacagataccaaaactgtacacatcacatttcctgttataggggtttccatttaaaacctgtaa |
43975038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 239 - 395
Target Start/End: Complemental strand, 1666568 - 1666412
Alignment:
| Q |
239 |
acctcaggagccatgtaaccaagtgtaccagtctccccggtcatgtcattaggattcgacgcttcaatacgtgcaacgccaaaatcagcaattttaacgg |
338 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || || |||||||||| ||||||||| ||||| ||||| || || ||||||||||| ||||| | | |
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|
| T |
1666568 |
acctcaggagccatgtaaccaagggttccagtttcaccagtcatgtcatgaggattcgaagcttcgatacgagctacaccaaaatcagcgattttcaacg |
1666469 |
T |
|
| Q |
339 |
tgcgagacttatccaacagcatgttctctgtctttacatctctgtggacaatcttct |
395 |
Q |
| |
|
| || | ||| || | |||||||| ||||| || |||||||||||||||||||||| |
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|
| T |
1666468 |
ttcgtgtcttgtctagaagcatgttttctgttttaacatctctgtggacaatcttct |
1666412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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