View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7934_low_3 (Length: 778)

Name: NF7934_low_3
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7934_low_3
NF7934_low_3
[»] chr8 (1 HSPs)
chr8 (19-717)||(6856900-6857597)


Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 19 - 717
Target Start/End: Original strand, 6856900 - 6857597
Alignment:
Q  19 aaaggtatagattcaactttttatcaatgtgaagacttggttgatgtacaaatttataagnnnnnnn-caagtttcactaattgttgttgtcaactttga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||        ||||||||||||||||||| ||||||||||||    
T  6856900 aaaggtatagattcaactttttatcaatgtgaagacttggttgatgtataa-tttataagtttctttgcaagtttcactaattgttgatgtcaactttga 6856998  T
Q  118 cttcggtaagaaaattgttcttctccctctttgttcattctcttatatcagcggcagttaactgttgctcggcattttgcagcggtggtttacggaccgc 217  Q
    |||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |  |||||||||||||| |||||||||||| ||||    
T  6856999 cttccgtaagaaaattgttcttttccctcttttttcattttcttatatcagcggcagttaactgctattcggcattttgcagtggtggtttacgg-ccgc 6857097  T
Q  218 tgatacttttaagattagttccattattttttaagtttgttcaatcaattataaaagcgtcaagaacagttaactatggttgaaaaatgtattgatataa 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||||||||||||| | ||||||    
T  6857098 tgatacttttaagattagtttcattattttttaagtttgttcaattgattataaaagcgtcaaggacagttaactatcgttgaaaaatgtactaatataa 6857197  T
Q  318 gataatgaacaatttcataagtgaaatgagtaacaccttcaaactaaaattcattaggctaaatgtgggtcgaacaaaaatgaactaaaatctttaaact 417  Q
    ||||||||||||||| |||||||| | || |||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  6857198 gataatgaacaattttataagtgacacgactaacacctccaaactaaaatttatttggctaaatgtgggtcgaataaaaatgaactaaaatcattaaact 6857297  T
Q  418 ctagtttcaattgaacattaatcttagagaaaagaaagtaaaatcaaaatcagattcacaaataaagctttaggtggcttgtaatgaaatttatattgtc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6857298 ctagtttcaattgaacattaatcttagagaaaagaaagtaaaatcaaaatcagattcacaaataaagctttaggtagcttgtaatgaaatttatattgtc 6857397  T
Q  518 caaaaatagaaacatacgagtgatttacatagtattcatcacgatgtattaaaactcaatccaacaacaaacaatggataaggataaacacgtcactatt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857398 caaaaatagaaacatacgagtgatttacatagtattcatcacgatgtattaaaactcaatccaacaacaaacaatggataaggataaacacgtcactatt 6857497  T
Q  618 actttctttctttctcggacaaacaaaatactnnnnnnncactctaatccaaaactgacacgtgtccttttcccacctccattttcaccttcatatccac 717  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857498 actttctttctttctcggacaaacaaaatactaaaaaaacactctaatccaaaactgacacgtgtccttttcccacctccattttcaccttcatatccac 6857597  T

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