View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7934_low_4 (Length: 589)
Name: NF7934_low_4
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 571
Target Start/End: Complemental strand, 4468849 - 4468288
Alignment:
| Q |
12 |
gagatgaattggtcgagattgacgttaggtcagtacctgcagtcactctgacgttcaagtcaatgattgagcaaagagtatgagatagaaagtggatata |
111 |
Q |
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| T |
4468849 |
gagatgaattggtcgagattgacgttaggtcagtacctgcagtcactctgacgttcaagtcaatgattgagcaaagagtatgagatagaaagtggatata |
4468750 |
T |
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| Q |
112 |
aattgacaaattgtgtaccttgcatttgtggtgaaagaagcatgtattttataggcactgacaaggagttgttagagactgacaaagggttcgttacata |
211 |
Q |
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| T |
4468749 |
aattgacaaattgtgtaccttgcatttgtggtgaaagaagcatgtattttataggcactgacaaggagttgttagagattgacaaagggttcgttacata |
4468650 |
T |
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| Q |
212 |
cgacgtttatcagtgttcagctccaacgactattacta-ctgttgggggtgttacacatgatcaagaatctagaactgagctagccattgaggcgttacg |
310 |
Q |
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| T |
4468649 |
ctacgtttatcagtgttcagctccaacgactattactagccgttgggggtgttacacatgatcaagaatctagaactgagctagccattgaggcgttacg |
4468550 |
T |
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| Q |
311 |
ggatagtgagaatccatggttgagcctgtgtgtttagccttacataacgaagattttgaggcctatgccagttcataaca-aagtgatgtttgaaagtag |
409 |
Q |
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| T |
4468549 |
ggatagtgagaatccatggttgagcctgtgtgtttagccttacataacgaagattttgaggcctatgccagttcataacataagtgatgtttgaaagtag |
4468450 |
T |
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| Q |
410 |
aaaaattggagctaaattatgaactatttgattttcatatatttcatgaatgcatgattccccctctagttattcatctgggttcttcatcatgttattg |
509 |
Q |
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| T |
4468449 |
aaaaattggagctaaattatgaactatttgattttcatatatttcatgaatgcatgattccccctctagttattcatctgggttcttcatcatgttattg |
4468350 |
T |
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| Q |
510 |
cttatataaacaatatttctttacgttttagatcaaacaattaattaagataacgtgaatgt |
571 |
Q |
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| T |
4468349 |
cttatataaacaatatttctttacgttttagatcaaacaattaattaaaatcacgtgaatgt |
4468288 |
T |
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