View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7934_low_7 (Length: 370)
Name: NF7934_low_7
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 45971706 - 45972055
Alignment:
| Q |
1 |
ctctatctctcatacttttcatcttctatgacttacaaacgtttgaaagatcagaactattatttgagacaatacatcttttcgtcgaaaacacgtgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45971706 |
ctctatctctcatacttttcatcttctatgacttacaaacgtttgaaagatcagcactgtaatttgagacaatacatcttttcgtcgaaaacacttgaag |
45971805 |
T |
|
| Q |
101 |
aagcataactagaaatcgtagcatgactaaaaatcggactgatgtgataagtttgtttgttttcgtctcatgccaaagagcatttttcttaaaaaatact |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45971806 |
---catgactagaaatcgtagcatgactaaaaatcggactgatgtgataagtttctttgttttcgtctcatgccaaagagcatttttcttaaaaaatact |
45971902 |
T |
|
| Q |
201 |
ttaaaaaacactgtatttgacatcaaagtttggatgtcaaaatatcannnnnnnnnnnnnnnnaaccttttataatttcagagattaacttacaatatta |
300 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45971903 |
taaaaaaacactgtatttaacatcaaagtttggatgtcaaaatatca-tttttttttttttttaaccttttataatttcagagattaacttacaatatta |
45972001 |
T |
|
| Q |
301 |
cagtgtctagtgnnnnnnnntcttacaatattacaatgtgattgtttagtaccat |
355 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45972002 |
cagtgtctagtg-aaaaaaatcttacaatattacaatgtgattgtttagtaccat |
45972055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 10313905 - 10313938
Alignment:
| Q |
214 |
tatttgacatcaaagtttggatgtcaaaatatca |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
10313905 |
tatttgacatcaaagttttgatgtcaaaatatca |
10313938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 49107695 - 49107731
Alignment:
| Q |
211 |
ctgtatttgacatcaaagtttggatgtcaaaatatca |
247 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
49107695 |
ctgtatttgacatcaaagttttgatgttaaaatatca |
49107731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University