View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7934_low_9 (Length: 323)
Name: NF7934_low_9
Description: NF7934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7934_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 51877997 - 51877713
Alignment:
| Q |
23 |
atcagaaaagaagaaacaatatgtagagtggaatatacgcattcaccaaattagaaaaacatttagactaatgaccattctttaataagtttcttttctt |
122 |
Q |
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| T |
51877997 |
atcagaaaagaagaaacaatatgtagagtggaatatacgcattcaccaaattagaaaaacatttagactaatgaccattctttaataagtttcttttctt |
51877898 |
T |
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| Q |
123 |
cctatatatatgatctctggtcatatttcaagaaatcaacttgaatacggactgcatgtttatattgaccaaacttactatataaagtccttatggagtg |
222 |
Q |
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| T |
51877897 |
cctatat----gatctctgggcatatttcaagaaatcaacttgaatacggactgcatgtttatattgaccaaacttactatataaagttcttaaggatta |
51877802 |
T |
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| Q |
223 |
caattagaaaactcattagcattttcatatataaaattgtatatcgtacaaaattaggtcttgtaaaagataatgttattcaatatatt |
311 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51877801 |
caattagaaaactcgttagcatttccatatataaaattgtatatcgtacaaaattagatcttgtaaaagataatgttattcaatatatt |
51877713 |
T |
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