View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_high_12 (Length: 444)
Name: NF7935_high_12
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 426
Target Start/End: Complemental strand, 12060858 - 12060459
Alignment:
| Q |
20 |
agaattcaaagtccgaaccctaactcttgtaagtaatgtcgatgtgggtaatttggggggttttagaacgatggagagtaattggttattctcttggtgt |
119 |
Q |
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| T |
12060858 |
agaattcaaagtccgaaccctaaatcttgtaagtaatgtcgatgtgggtaatttggggggttttagaacgatggagagtaattggttattctcttggtgt |
12060759 |
T |
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| Q |
120 |
cgtccgctttttgtttgggagaataatatgcttcgggagttgttggaagacttggaaggatttaggggtcacatgaagaagatgtttggtagtggaggtt |
219 |
Q |
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| T |
12060758 |
cgtccgttttttgtttgggagaataatatgcttcgggagttgttggaagacttggaaggatttaggggtcacatgaagaagatgtttggtagtggaggtt |
12060659 |
T |
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| Q |
220 |
ggaatttatgtataagaagttagtggggttgatgctttgaggagggctctttaacggatgtgcaagggagggtgttttcgcatattcgcaagagtccggc |
319 |
Q |
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| T |
12060658 |
ggaatttatgcataagaatttagtggggttgatgctttgaggagggctctttaacggatttgcaagggagggtgttttcgcatattcgcaagagtccggc |
12060559 |
T |
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| Q |
320 |
tccaaccaaagttgtggagttctcatggaaacttctacatgataggattcctaaatgttttgctaggagtannnnnnnncttcttctgttttttgggtgg |
419 |
Q |
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| T |
12060558 |
tccaaccaaagttgtcgagttctcatggaaacttctacatgataggattcc-------tttgctaggactattttttttcttcttctgttttttgggtgg |
12060466 |
T |
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