View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7935_high_14 (Length: 390)
Name: NF7935_high_14
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 5332203 - 5331844
Alignment:
| Q |
12 |
agaacctgtgacgtataaatacatgagtcaattatctatatacttgcatttcaaataaaacttgggattaaattaaattatattggtgtattacttgaga |
111 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332203 |
agaacctataacgtataaatacatgagtcaaatatctatatacttgcatttcaaataaaacttgggattaaattaaattatattggtgtattacttgaga |
5332104 |
T |
|
| Q |
112 |
atttgttatgacttaaagtttatgaggagagttcaaccnnnnnnnttagtctattaaacgatagaacgtcatagtttaagtatcacactgaactttattt |
211 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5332103 |
atttgttatgacttaaagtttataaggagagttcaaccaaaaaaattagtctattaaacgagagaacgtcatagtttaagtatcacactgaactttcttt |
5332004 |
T |
|
| Q |
212 |
tctactcgacatgtaactcataacattgccactcctttaagaaccgatgatcacaacgactttcactccctttacactgatctggtggacgatggtagtc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
5332003 |
tctactcgacatgtaactcataacattgccactcctttaagaaccgatgatcacaacgacttttactctctttaca-----ctggtggacgatggtagtc |
5331909 |
T |
|
| Q |
312 |
atttcctctttggcagcttcactcgtctattggtattcaatggtgaaccttaataaagtctatag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331908 |
atttcctctttggcagcttcactcgtctattggtattcaatggtgaaccttaataaagtctatag |
5331844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University