View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_high_22 (Length: 223)
Name: NF7935_high_22
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 41470079 - 41469895
Alignment:
| Q |
16 |
atacttccattcaactctgttacttgctgccataacttattattcctactctaccaaatgctccacataattgtgactagtagctcagattgcaccgctg |
115 |
Q |
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| T |
41470079 |
atacttccattcgactctgttacttgct-ccataacttattattcctactctttcaaatgctccacataattgtgattagtagctcagattgcaccgctg |
41469981 |
T |
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| Q |
116 |
aaccatgttccaacagataaaaaataatgtccggtgcatcatcaaacctatgcagaagcggttctatcaccttccataaacctgta |
201 |
Q |
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| T |
41469980 |
aaccatgttccaacagataaaaaataatgtccggtgcatcatcaaacctatgcagaagcggttctatcacctgccataaacctgta |
41469895 |
T |
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Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 31 - 195
Target Start/End: Original strand, 11594455 - 11594619
Alignment:
| Q |
31 |
tctgttacttgctgccataacttattattcctactctaccaaatgctccacataattgtgactagtagctcagattgcaccgctgaaccatgttccaaca |
130 |
Q |
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| T |
11594455 |
tctgttacttgctgccataatttattattcctactcttccaaatgctccacataattgttacaagtagttcggattgcaccgttgtaccatgttccaaca |
11594554 |
T |
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| Q |
131 |
gataaaaaataatgtccggtgcatcatcaaacctatgcagaagcggttctatcaccttccataaa |
195 |
Q |
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| T |
11594555 |
gatagaatataatttccggcgcatcatcaaatctatgcagaagcggttctatcacctgccataaa |
11594619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 11108304 - 11108468
Alignment:
| Q |
31 |
tctgttacttgctgccataacttattattcctactctaccaaatgctccacataattgtgactagtagctcagattgcaccgctgaaccatgttccaaca |
130 |
Q |
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| T |
11108304 |
tctgttacttgctgccataatttattattcctactcttccaaatgctccacataattgttactagt---tcgtattgcaccgctgtaccatgttccaaaa |
11108400 |
T |
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| Q |
131 |
gataaaaaataatgtccggtgcatcatcaaacctatgcagaagcggttctatcaccttccataaacct |
198 |
Q |
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| T |
11108401 |
gatagaatataatttccgacgcatcatcaaatctatgcagaagcggttctatcacctgccataaacct |
11108468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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