View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_high_3 (Length: 637)
Name: NF7935_high_3
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 128 - 622
Target Start/End: Complemental strand, 35452006 - 35451512
Alignment:
| Q |
128 |
gatcatgccgaacccctgtgaagaagattcaacactgcagtccacctctctatcccaggatagaaaaaagcaaaaccttccctacttctctattgcagca |
227 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35452006 |
gatcacgccgaacccctgtgaagaagattcaacactgcagtccacctctctatcccaggatagaaaaaagcaaaaccttccctacttctctattgcagca |
35451907 |
T |
|
| Q |
228 |
ccccctctactctgcttatgacactgcggtagaagaaaactagcaaagcacatgattccaacaccattcttagccatcctactaaggaaccacctccaag |
327 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35451906 |
ccccctctactctgcttatgacactgtggtagaagaaaactagcaaaacacatgattccaacaccattcttagccatcctactaaggaaccacctccaag |
35451807 |
T |
|
| Q |
328 |
atacctctttaatcctatcaaccacttcttccagcaagcacgccgattataannnnnnnnaccattcctaatattccccaccatccacaccgtagtatga |
427 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| |
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| T |
35451806 |
atacctctttaatcctatcgaccacttcttccagcaagcacgccgattataattttttttaccattcccaatactccccaccattcacaccgtagtatga |
35451707 |
T |
|
| Q |
428 |
ttcaaccattaaggcacagagagtaaataaattgagaggaaaaacaatcaccaaccccagccatctaaacacatgctgccaaattcccctctccacatca |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35451706 |
ttcaaccattaaggcacagagagtaaataaattgagaggaaaaacaatcaccaaccccagccatctaaacacatgctgccaaattcccctctccacatca |
35451607 |
T |
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| Q |
528 |
caatgtaacaccgactctactgacccatcacacaaagaacaccggtctttatccccttctaaactgatttcccttcttctgagattcacaagaag |
622 |
Q |
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| T |
35451606 |
caatgtaacaccgactctactgacccatcacacaaagaacaccggtctttatccccttctaaactgatttcccttcttctgagattcacaagaag |
35451512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 35452121 - 35452077
Alignment:
| Q |
13 |
gagaccaaaaagcaggacaacactacttgactaaccaaccgaata |
57 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
35452121 |
gagaccaaaaagcaggacaacattacttgcctaaccaaccgaata |
35452077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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