View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_high_4 (Length: 627)
Name: NF7935_high_4
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_high_4 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 136 - 389
Target Start/End: Original strand, 13231046 - 13231289
Alignment:
| Q |
136 |
gagataacaagaaagaaagtatctattttatttagttattcagttaaaccaatcattcattattggaacagatagtaacaaccatctcctccgggaaaag |
235 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13231046 |
gagataacgagaaagaaagtatctattttatttagttattcagttaaaccaatcattcgttattggaacagatagtaacaaccatctcctccgggaaaag |
13231145 |
T |
|
| Q |
236 |
ccatctttttctcaacaatgtctttgtaatttgagccaatagggtttccattagataggaacagatttgataaatattgataatattgataactctcgga |
335 |
Q |
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| T |
13231146 |
ccatctttttctcaacaatgtctttgtaatttgagccaataggg-ttccattagataggaacagatttgata---------aatattgataactctcgga |
13231235 |
T |
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| Q |
336 |
tagagtagtagaatgaaacaattaatttgagaatgaactattggttccaaactg |
389 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |
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| T |
13231236 |
tagagtagtagaacgaaacaattcatttgagaatgaactattggttctaaactg |
13231289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 136 - 389
Target Start/End: Original strand, 40511254 - 40511497
Alignment:
| Q |
136 |
gagataacaagaaagaaagtatctattttatttagttattcagttaaaccaatcattcattattggaacagatagtaacaaccatctcctccgggaaaag |
235 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40511254 |
gagataacgagaaagaaagtatctattttatttagttattcagttaaaccaatcattcgttattggaacagatagtaacaaccatctcctccgggaaaag |
40511353 |
T |
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| Q |
236 |
ccatctttttctcaacaatgtctttgtaatttgagccaatagggtttccattagataggaacagatttgataaatattgataatattgataactctcgga |
335 |
Q |
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| T |
40511354 |
ccatctttttctcaacaatgtctttgtaatttgagcaaataagg-ttccattagataggaacagatttgata---------aatattgataactctcgga |
40511443 |
T |
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| Q |
336 |
tagagtagtagaatgaaacaattaatttgagaatgaactattggttccaaactg |
389 |
Q |
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||||||||||||| ||||||||| |||||| |||||||||||||||| |||||| |
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| T |
40511444 |
tagagtagtagaacgaaacaattcatttgataatgaactattggttctaaactg |
40511497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 139 - 382
Target Start/End: Complemental strand, 818 - 585
Alignment:
| Q |
139 |
ataacaagaaagaaagtatctattttatttagttattcagttaaaccaatcattcattattggaacagatagtaacaaccatctcctccgggaaaagcca |
238 |
Q |
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| T |
818 |
ataacgagaaagaaagtatctattttatttagttattcagttaaaccaatcattcgttattggaacagatagtaacaaccatctcctccgggaaaagcca |
719 |
T |
|
| Q |
239 |
tctttttctcaacaatgtctttgtaatttgagccaatagggtttccattagataggaacagatttgataaatattgataatattgataactctcggatag |
338 |
Q |
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| T |
718 |
tctttttctcaacaatgtctttgtaatttgagccaataggg-ttccattagataggaacagatttgata---------aatattgataactctcggatag |
629 |
T |
|
| Q |
339 |
agtagtagaatgaaacaattaatttgagaatgaactattggttc |
382 |
Q |
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| T |
628 |
agtagtagaacgaaacaattcatttgagaatgaactattggttc |
585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 139 - 382
Target Start/End: Original strand, 83717 - 83950
Alignment:
| Q |
139 |
ataacaagaaagaaagtatctattttatttagttattcagttaaaccaatcattcattattggaacagatagtaacaaccatctcctccgggaaaagcca |
238 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
83717 |
ataacgagaaagaaagtatctattttatttagttattcagttaaaccaatcattcgttattggaacagatagtaacaaccatctcctccgggaaaagcca |
83816 |
T |
|
| Q |
239 |
tctttttctcaacaatgtctttgtaatttgagccaatagggtttccattagataggaacagatttgataaatattgataatattgataactctcggatag |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
83817 |
tctttttctcaacaatgtctttgtaatttgagccaataggg-ttccattagataggaacagatttgata---------aatattgataactctcggatag |
83906 |
T |
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| Q |
339 |
agtagtagaatgaaacaattaatttgagaatgaactattggttc |
382 |
Q |
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| T |
83907 |
agtagtagaacgaaacaattcatttgagaatgaactattggttc |
83950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 471 - 606
Target Start/End: Complemental strand, 19352156 - 19352019
Alignment:
| Q |
471 |
acttttccgtataattatttttgtttccctataaagacttgatgactcagaaatgcacaaatgtttgttagggttacaac---aacatcactgtggttct |
567 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
19352156 |
acttttccgtataattattttt-tttccctataaagacttgatgactcagaaatacacaaatgtttgttagggttacaacaacaacatcactgcggttct |
19352058 |
T |
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| Q |
568 |
tcatagatacgctcagcatacattcataacatagctgct |
606 |
Q |
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| T |
19352057 |
tcttagttacgctctgcatacattcataacatagctgct |
19352019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 564 - 610
Target Start/End: Original strand, 19356952 - 19356998
Alignment:
| Q |
564 |
ttcttcatagatacgctcagcatacattcataacatagctgctgctg |
610 |
Q |
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| T |
19356952 |
ttcttcatagttacgctcagcatacatccataacatagctgctgctg |
19356998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 247 - 389
Target Start/End: Complemental strand, 18354469 - 18354337
Alignment:
| Q |
247 |
tcaacaatgtctttgtaatttgagccaatagggtttccattagataggaacagatttgataaatattgataatattgataactctcggatagagtagtag |
346 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18354469 |
tcaacaatgtctttgtaatttgagccaatagggtt-ccattagataggaacagatttgataaatattg---------ataactctcggatagagtagtag |
18354380 |
T |
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| Q |
347 |
aatgaaacaattaatttgagaatgaactattggttccaaactg |
389 |
Q |
| |
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|| ||||||||| ||||||||||||||||||||||| |||||| |
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| T |
18354379 |
aacgaaacaattcatttgagaatgaactattggttctaaactg |
18354337 |
T |
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