View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7935_high_8 (Length: 545)
Name: NF7935_high_8
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 520260 - 519767
Alignment:
| Q |
1 |
agtctttagttcattaaaatgaagagcagatagatgggatccaggaaggaaaaagagaagttcaatctgagagtgttttgttttatatgattaatt-aat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
520260 |
agtctttagttcattaaaatgaagagcagat----gggatccaggaaggaaaaagagaagctcaatctgagagtgttttgttttatatgattaatttaat |
520165 |
T |
|
| Q |
100 |
ttagttgaaaggtgcagtgcatgtgtgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatat |
199 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
520164 |
ttagttgaaaggtgca-----tatatgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatat |
520070 |
T |
|
| Q |
200 |
ttattaattaatgaaactcttttgtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccatccatgcacat |
299 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
520069 |
t----aattaatgaaactcttttgtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccat----gcacat |
519978 |
T |
|
| Q |
300 |
ggagagtttttcattctccaaggttcttgttacaaacaactttttgatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtat |
399 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
519977 |
ggagagtttttcattctccaaggttgttgttacaaacaacttttagatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtat |
519878 |
T |
|
| Q |
400 |
ggcattaattataattaatttttataaatatagcaaactgctaaaaagacaacagaaggaaagggaaaaggaagttcaataataatttaatgatggaaat |
499 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
519877 |
ggcatta------attaatttatataaatatagcaaactgctaaaaagac-----------agggaaaaggaagttcaataataatttaacgatggaaat |
519795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University