View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_10 (Length: 463)
Name: NF7935_low_10
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 252 - 463
Target Start/End: Complemental strand, 24003601 - 24003390
Alignment:
| Q |
252 |
atgctttatttacttattctattcaatattgatgttggtagttcct-ctcttgtttggccacgtttggtaataattttcgtaggcaactgaggttttgac |
350 |
Q |
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| T |
24003601 |
atgcattatttacttattcaatttaatattgatgtggttagttccttctcttgtttggccgtgtttggcaagaattttcgtaggcaactgaggttttgac |
24003502 |
T |
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| Q |
351 |
tgagtatcgtttcacttcaatcgcaagaatttcaaactgtattaactatgcaaggtcaattctggttagacaatgcatatattctttgtcttttcatttg |
450 |
Q |
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| T |
24003501 |
-gagtatcgtttcacttcaatcgcaagaatttcaaactgtattaacaatgcaaggtcatttcaggttagacaatacatatattctttgtttgttcatttg |
24003403 |
T |
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| Q |
451 |
ttatgttctgcac |
463 |
Q |
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| T |
24003402 |
gtatgttctgcac |
24003390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 323 - 463
Target Start/End: Complemental strand, 23939345 - 23939206
Alignment:
| Q |
323 |
aattttcgtaggcaactgaggttttgactgagtatcgtttcacttcaatcgcaagaatttcaaactgta-ttaactatgcaaggtcaattctggttagac |
421 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||| |||||||| |||||||| |||||||||||| |
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| T |
23939345 |
aattttcgtaggcaactgaggttttgatcgagtatcgtttcacttcaatcgcaagaataacaagcggtatttaactatacaaggtcatttctggttagac |
23939246 |
T |
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| Q |
422 |
aatgcatatattctttgtcttttcatttgttatgttctgcac |
463 |
Q |
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| T |
23939245 |
aatacatatattc--tgtcttttcatttgatatattctgcac |
23939206 |
T |
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