View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_11 (Length: 457)
Name: NF7935_low_11
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 42146688 - 42147120
Alignment:
| Q |
10 |
agtgagatgaaataatgagtggtagtaaaatatcccaaaaataataaataatgatttttatcatttatgaatggaacagcaaattgacttttcacagtat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42146688 |
agtgatatgaaataatgagtggtagtaaaatatcccaaaaataataaataatgatttttattatttatgaatggaacagcaaattgacttttcacagtat |
42146787 |
T |
|
| Q |
110 |
aaataaatctaaagggtggtattcatgtttaaaattcttgagatttt-gttgtcttttattgtagcattgttacctatgtaagcatctaatgagcatgaa |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
42146788 |
aaataaatctaaagggtcgtattcatgtttaaaattcttgagatttttgttgtcttttattgtagcattgttagctatgtaggcatctaatgagcatgaa |
42146887 |
T |
|
| Q |
209 |
ttgggtccatgtgttgagtcatgctcaattgtgtttgccagagccaatattaaatgccaccattctct--gagttcctgatgatcttctatgtaagattc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42146888 |
ttgggtccatgtgttgagtcatgctcaattgtgtttgccagagccaatattaaatgccaccattctctttgagttcctgatgatcttctatgtaagattc |
42146987 |
T |
|
| Q |
307 |
attctgtaacgaacagaaagcaatatgatatatatgtcacatgctgcttgcagtattacatatcaattttcaaattcaaggaaaaagacatgttagttca |
406 |
Q |
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| T |
42146988 |
attctgtaacgaacagaaagcaatatgatatatatgtcacatgctgcttgcagtattacatatcaattttcaaattcaaggaaaaagacatgttagttca |
42147087 |
T |
|
| Q |
407 |
agttggttacaaacatgcattctggtttggatt |
439 |
Q |
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| T |
42147088 |
agttggttacaaacatgcattctggtttggatt |
42147120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 7633922 - 7633629
Alignment:
| Q |
10 |
agtgagatgaaataatgagtggtagtaaaatatcccaaaaataataaataatgatttttatcatttatgaatggaacagcaaattgacttttcacagtat |
109 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||| || || |
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| T |
7633922 |
agtgagatgaaataacgagtggtaataaagtatcccaaaaataataa-taatgattcttattgtttatgaatggaacaacaaattgacttttcatagcat |
7633824 |
T |
|
| Q |
110 |
aaataaatctaaagggtggtattcatgtttaaaattcttgagattttgttgtcttttattgtagcattgttacctatgtaagcatctaatgagcatgaat |
209 |
Q |
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|| |||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||| |
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| T |
7633823 |
gaa-aaatctaatgggtcgtattcatgtttaaaattcttgagattttcttgtcttttattgtagcatagttggatatgtaggcatctaatgagcatgaat |
7633725 |
T |
|
| Q |
210 |
tgggtccatgtgttgagtcatgctcaattgtgtttgccagagccaatattaaatgccaccattctc--tgagttcctgatgatcttctatgtaagat |
304 |
Q |
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||||||||||||||||||| || ||||||||| |||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
7633724 |
tgggtccatgtgttgagtcgtgatcaattgtggttgccagagccagtactaaatg-caccattctctttgagttcctgatgatcttctatgtaagat |
7633629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 128 - 337
Target Start/End: Complemental strand, 1860684 - 1860473
Alignment:
| Q |
128 |
gtattcatgtttaaaattcttgagattttgttgtcttttattgtagcattgttacctatgtaagcatctaatgagcatgaattgggtccatgtgttgagt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
1860684 |
gtattcatgtttaaaattcttgagattttgttgtcttttattgtaggattgttagctatgtaggcatctaatgagcatgaattgggtccaatggttgagt |
1860585 |
T |
|
| Q |
228 |
catgctcaattgtgtttgccagagccaatattaaatgccaccattctc--tgagttcctgatgatcttctatgtaagattcattctgtaacgaacagaaa |
325 |
Q |
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| | || | |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
1860584 |
cgcgatcgactgtggttgccagtgccaatattaaatgccaccattctctttgagttcctgatgatcttctacgtaagactctgtctgtaacgaacagaaa |
1860485 |
T |
|
| Q |
326 |
gcaatatgatat |
337 |
Q |
| |
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| ||||||||| |
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| T |
1860484 |
gttatatgatat |
1860473 |
T |
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