View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_13 (Length: 443)
Name: NF7935_low_13
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 1235638 - 1236033
Alignment:
| Q |
16 |
ttggagttaccggagtttctggagttgaatctgaaggtatttgtgaagctggagccggagttgaagctggagctggtgccggagccggagttggagcctc |
115 |
Q |
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| T |
1235638 |
ttggagttaccggagtttctggagttgaatctgaaggtatttgtgaagctggagc------------tggtgccggagccggagctggagttggagcctc |
1235725 |
T |
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| Q |
116 |
aatggtagctccaattatatgagcctgaaataaaatcattcatgtaacattaagaaaggatataaagaattaatagaaaatcatgtaaataatttgttca |
215 |
Q |
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| T |
1235726 |
aatggtagctcctattatatgagcctgaaataaaatcattcatgtaacattaa-aaaggatataaagaattaatagaaaatcatgtaaataatttgttca |
1235824 |
T |
|
| Q |
216 |
aatgcatgcaacatcaagtttaaggttttaaaaaacaggcgttaccgtgaaaacggccggtataggacagtttatgccagatttatatgtgggaaggaaa |
315 |
Q |
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| T |
1235825 |
aatgcatgcaacatcaagtttaaggttttaaaaaacgggcgttaccgtgaaaacggccggtataggacagtttatgccagatttatatgtgggaaggaaa |
1235924 |
T |
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| Q |
316 |
atcacacgaaaactccagatgccggattttggtcatcgcctcttctttatgtacagatcgttactccttcaattactctcttaattttggtgttgttatg |
415 |
Q |
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| T |
1235925 |
atcacacgaaaactccagatgccggattttggtcatcgcctcttctttatctacagatcgttactccttcaattactctcttaatttttgtgttgttatg |
1236024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 41968575 - 41968748
Alignment:
| Q |
18 |
ggagttaccggagtttctggagttgaatctgaaggtatttgtgaagctggagccggagttgaagctggagctggtgccggagccggagttggagcctcaa |
117 |
Q |
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| T |
41968575 |
ggagttgcaggagtttctggagttgaatctgaagctgtagttgaagttggagctggagatggagatggagatggtgccggagctggagttggagcctcaa |
41968674 |
T |
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| Q |
118 |
tggtagctccaattatatgagcctgaaataaaatcattcatg---taacattaagaaaggatataaagaattaat |
189 |
Q |
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| T |
41968675 |
tggtagctccaattatatgagcctgaaataaaatcattcatgtaataacattaa-aaaggatataaagaattaat |
41968748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 420
Target Start/End: Original strand, 41968859 - 41968889
Alignment:
| Q |
390 |
actctcttaattttggtgttgttatgtaagt |
420 |
Q |
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| T |
41968859 |
actctcttaattttggtgttgttatgtaagt |
41968889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 29522023 - 29521975
Alignment:
| Q |
341 |
attttggtcatcgcctcttctttatgtacagatcgttactccttcaatt |
389 |
Q |
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| T |
29522023 |
attttggtcatcacctcttctttatttacagttcattactccttcaatt |
29521975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Original strand, 36033557 - 36033591
Alignment:
| Q |
390 |
actctcttaattttggtgttgttatgtaagtgtgt |
424 |
Q |
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| T |
36033557 |
actctcttaattttggtgttgttgtgtaagtgtgt |
36033591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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