View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7935_low_15 (Length: 420)

Name: NF7935_low_15
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7935_low_15
NF7935_low_15
[»] chr1 (1 HSPs)
chr1 (79-420)||(5577628-5577966)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 79 - 420
Target Start/End: Original strand, 5577628 - 5577966
Alignment:
Q  79 gatcaaaccaaaacctaacaaatactctcaaatgaactttcaaacaaaatcgattatttaaaaagcgattatctgaacaaaatggatggtgagatgatgg 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5577628 gatcaaaccaaaacctaacaaatactctcaaatgaactttcaaacaaaatcgattatttaaaaagcgattatctgaacaaaatggatggtgagatgatgg 5577727  T
Q  179 aaacggaggcgtctagctccggtcaaaacgacgccgttcgtgatttgcttacattggctcgccaattcatcaatcaaggaaaaccctctcaagcccttca 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5577728 aaacggaggcgtctagctccggtcaaaacgacgccgttcgtgatttgcttacattggctcgccaattcatcaatcaaggaaaaccctctcaagcccttca 5577827  T
Q  279 agcggtaannnnnnnnnnnnnnnnnactttctttgacatcaagattcgtattaataacttgtcaaattaactaaattaagaaaaattagggattattttg 378  Q
    ||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5577828 agcggtaa---ttttttttttctttactttctttgacatcaagattcgtattaataacttgtcaaattaactaaattaagaaaaattagggattattttg 5577924  T
Q  379 catgttgggttgctaatgtattctgtgattcacaatttgtaa 420  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5577925 catgttgggttgctaatgtattctgtgattcacaatttgtaa 5577966  T

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