View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_17 (Length: 346)
Name: NF7935_low_17
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 2177114 - 2176810
Alignment:
| Q |
15 |
aatatcatatgaaaaattagaagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatctctcccctaacaaga |
114 |
Q |
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| T |
2177114 |
aatatcatatgaaaaattagcagcaaaattcaaagacacaaaggcaataacctacaaagatgaggtaggcaataaaaagatcatatctcccctaacaaga |
2177015 |
T |
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| Q |
115 |
aagggagttaggaaaagtgttcgttttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatg |
214 |
Q |
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| T |
2177014 |
aaggcagttaggaaaagtgttcggtttgcggattcagaacaagatgaaaaggatgagttgatgaaaggaagaagaagctgtggtagtaattatattgatg |
2176915 |
T |
|
| Q |
215 |
aattattaggagaaagagaaaggatgaatgttactagagtgaaggtgaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176914 |
aattattaggagaaagagaaaggatgaatgttactagagtgaaggtaaagatgacaaaggaagaagcagctaagttactgtcaaaatttaaatgcaaaga |
2176815 |
T |
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| Q |
315 |
aggag |
319 |
Q |
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||||| |
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| T |
2176814 |
aggag |
2176810 |
T |
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