View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_18 (Length: 320)
Name: NF7935_low_18
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 27465904 - 27466208
Alignment:
| Q |
1 |
aactaacaattataagagctggtaatcgaaagcccattttatgtgcttatttgggaaaagaagaacagatcaaagatataaatatattaagaaggatgta |
100 |
Q |
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| T |
27465904 |
aactaacacttataagagcgggtaatcgaaagcccattttatgtgcttatttgggaaaagaagaacagagcaaagatataaatatattaagaaggatgta |
27466003 |
T |
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| Q |
101 |
actaacacttgatgttgccaatgactaatgttgtttttgaaggaaatagcaagtatatttataattattgaggttctctgaaaagtgaaaatccgattcc |
200 |
Q |
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| T |
27466004 |
actaacacttgacgttgccaatgactaatgttgtttttgaaggaaatagcaagtatatttataattattgaggttctctgaaaagtgaaaatccgattcc |
27466103 |
T |
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| Q |
201 |
aatctaaaatattatttgaaagagttgaaagttaaaaagcataagataatatagcatgtggtgttgtcttaagattgcatttatcgtaccccaccttcta |
300 |
Q |
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| T |
27466104 |
aatctaaaatattatttgaaagagttgaaagttaaagagcataagataatatatcatgtggcgttgtcttaagattgcatttatcgtaccccaccttcta |
27466203 |
T |
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| Q |
301 |
agaaa |
305 |
Q |
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| T |
27466204 |
agaaa |
27466208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 27472978 - 27473247
Alignment:
| Q |
1 |
aactaacaattataagagctggtaatcgaaagcccattttatgtgcttatttgggaaaagaagaacagatcaaagatataaatatattaagaaggatgta |
100 |
Q |
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| T |
27472978 |
aactaacacttataagagaaggtaatcaaaagcccattttatgtgcttattaggtaaaagaagaacagagcaaagatataaatatattaagaaggattta |
27473077 |
T |
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| Q |
101 |
actaacacttgatgttgccaatgactaatgttgtttttgaaggaaatagcaagtatatttataattattgaggttctctgaaaagtgaaaatccgattcc |
200 |
Q |
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| T |
27473078 |
actagcacttgaggttgccaatgactaatgttgtttctgaaggaaatagcaagtatatttatagttattgaggttctc-------tgaaaatccaattcc |
27473170 |
T |
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| Q |
201 |
aatctaaaatattatttgaaagagttgaaagttaaaaagcataagataatatagcatgtggtgttgtcttaagattg |
277 |
Q |
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| T |
27473171 |
aagctaaattattatttgaaattgttaacgattaaatagcataagataatatagcatttggtgttgtcttaagattg |
27473247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 27517517 - 27517426
Alignment:
| Q |
186 |
tgaaaatccgattccaatctaaaatattatttgaaagagttgaaagttaaaaagcataagataatatagcatgtggtgttgtcttaagattg |
277 |
Q |
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| T |
27517517 |
tgaaaattcgattcaaagctaaattattatttgaaagagttaaaggttagagagcataagataatatagcatgtggcgttgtcttaagattg |
27517426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 27501064 - 27501023
Alignment:
| Q |
236 |
aaagcataagataatatagcatgtggtgttgtcttaagattg |
277 |
Q |
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| T |
27501064 |
aaaggataagatgatatagcatgtggtgttgttttaagattg |
27501023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 27526998 - 27526925
Alignment:
| Q |
107 |
acttgatgttgccaatgactaatgttgtttttgaaggaaatagcaagtatatttataattattgaggttctctg |
180 |
Q |
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| T |
27526998 |
acttgacgatgccaatgacttgtgttatttttggaagaaattgtaagtatatttatagttactgaggttctctg |
27526925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 27497611 - 27497683
Alignment:
| Q |
107 |
acttgatgttgccaatgactaatgttgtttttgaaggaaatagcaagtatatttataattattgaggttctct |
179 |
Q |
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| T |
27497611 |
acttgaggatgccaatgaattgtgttgtttgtgaaggcaagaggaagcgtatttataattattgaggttctct |
27497683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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