View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7935_low_2 (Length: 776)
Name: NF7935_low_2
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 295 - 765
Target Start/End: Complemental strand, 42552599 - 42552129
Alignment:
| Q |
295 |
ctaaatgacttaaaactgctcttattcttcttttttcgataagtggaaattctattaaaagcaactaggttggtatcaatagcacacacgcaaatttacc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42552599 |
ctaaatgacttaaaactgctcttattcttcttttttcgataagtggaaattctattaaaagcaactaggttggtatcaatagcacacacgcaaatttacc |
42552500 |
T |
|
| Q |
395 |
ccaataagggtgtgtttcccacacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcacnnnnnnn |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42552499 |
ccaataagggtgtgtttcccacacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcagaaaaaga |
42552400 |
T |
|
| Q |
495 |
nnnnnggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacat |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42552399 |
aaaaaggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaatgacaaaggtgcaaatcatgttaacagagacat |
42552300 |
T |
|
| Q |
595 |
taatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacac |
694 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42552299 |
taatgctttgagcagcagaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacac |
42552200 |
T |
|
| Q |
695 |
acaaatacacatgacaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaact |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42552199 |
acaaatacacatgacaaccacaatagcataccactttgacagagtgtctgggtcaccatcaactccaaact |
42552129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 42552870 - 42552663
Alignment:
| Q |
18 |
aaaaatcatagatctagaaatagggagatcattataccaaacagagnnnnnnnnnncagggagatcaaattcgtaaatgaggtaaaatagaggaagcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42552870 |
aaaaatcatagatctagaaatagggagatcattataccaaacagagaaaaaaaa--cagggagatcaaattcgtaaatgaggtaaaatagaggaagcaaa |
42552773 |
T |
|
| Q |
118 |
aaatgcatttaattatatctttcacaaattctttatgcaagacatggatacttacttacttacattagtaagtaagcattgaaacttgaaacaccagtcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42552772 |
aaatgcatttaattatatctttcacaaattctttatgcaagacatggatacttac----ttacactagtaagtaagcattgaaacttgaaacaccagtcg |
42552677 |
T |
|
| Q |
218 |
ttactagacaaccg |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42552676 |
ttactagacaaccg |
42552663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 504 - 682
Target Start/End: Original strand, 1238930 - 1239108
Alignment:
| Q |
504 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
603 |
Q |
| |
|
|||||||| || | |||||||||||||| || | ||| || ||||||| |||||||| | |||| ||| ||||||||||||| || ||||| | |||| |
|
|
| T |
1238930 |
aagaagatgaagagtccaaacttcatgtggcacaacatggtggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacacttt |
1239029 |
T |
|
| Q |
604 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcc |
682 |
Q |
| |
|
|||| || || |||| ||||| |||||||| ||||| ||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
1239030 |
gagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcgaatcc |
1239108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 504 - 679
Target Start/End: Original strand, 42517549 - 42517724
Alignment:
| Q |
504 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
603 |
Q |
| |
|
|||||||| || | |||||||||||||| || | ||| | ||||||| |||||||| | |||| ||| |||||||||||||||| ||||| | |||| |
|
|
| T |
42517549 |
aagaagatgaatagtccaaacttcatgtggcacaacatggcggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaacagaaacattgacacttt |
42517648 |
T |
|
| Q |
604 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaa |
679 |
Q |
| |
|
|||| || || || | ||||| || ||||| ||||| ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
42517649 |
gagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
42517724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 395 - 752
Target Start/End: Original strand, 18233714 - 18234071
Alignment:
| Q |
395 |
ccaataagggtgtgtttcccacacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcacnnnnnnn |
494 |
Q |
| |
|
||||||||| ||| | ||||| || ||||||||||||| ||||||||| |||| ||||| || | ||||||||||||||| | |||||||| |
|
|
| T |
18233714 |
ccaataaggatgtttctcccatacggttgacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccagtcatcacaacaacg |
18233813 |
T |
|
| Q |
495 |
nnnnnggcgaagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacat |
594 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
18233814 |
aaaaaggcgaagaagataaataatccaaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacat |
18233913 |
T |
|
| Q |
595 |
taatgctttgagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacac |
694 |
Q |
| |
|
| || |||||||| || ||||||| ||| || || || || ||||| ||||||||||||| |||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
18233914 |
tgatactttgagccgcagaacgaacttcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgtacac |
18234013 |
T |
|
| Q |
695 |
acaaatacacatgacaaccacaatagcataccactttgacagagtgtctgggtcacca |
752 |
Q |
| |
|
|||||| ||||| ||||| ||||| ||||||||||||| || | | ||||||||||| |
|
|
| T |
18234014 |
acaaatgcacataacaacaacaattgcataccactttggcaaaacgcctgggtcacca |
18234071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 504 - 675
Target Start/End: Original strand, 41971436 - 41971607
Alignment:
| Q |
504 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
603 |
Q |
| |
|
|||||||| || | |||||||||||||| || ||| || ||||||| | |||||| | |||| ||| ||||||||||||| || ||||| | |||| |
|
|
| T |
41971436 |
aagaagatgaagagtccaaacttcatgtggcacgacatggtggtgaaaactcgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacacttt |
41971535 |
T |
|
| Q |
604 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
675 |
Q |
| |
|
|||| || || || | ||||| |||||| | ||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
41971536 |
gagccgctgatcgcacctcaagtggaaaagtttcacttggcaccaaccatccaagaggaccccaagaccatg |
41971607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 504 - 683
Target Start/End: Complemental strand, 36202877 - 36202698
Alignment:
| Q |
504 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
603 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||||| | ||||| ||| ||||| | |||||| ||| |||||| ||||| || || | |||| |
|
|
| T |
36202877 |
aagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgtttacacttt |
36202778 |
T |
|
| Q |
604 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcct |
683 |
Q |
| |
|
|||| || |||||||| || | || |||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
36202777 |
gagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcct |
36202698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 504 - 673
Target Start/End: Original strand, 35922170 - 35922339
Alignment:
| Q |
504 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
603 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||| || ||||| ||| ||||| | || ||| ||| |||||| ||||| ||||| | |||| |
|
|
| T |
35922170 |
aagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacacttt |
35922269 |
T |
|
| Q |
604 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagacca |
673 |
Q |
| |
|
|||||||||| ||||| || | ||||| |||||||| | ||||||||||| ||||||||||| ||||| |
|
|
| T |
35922270 |
gagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgacca |
35922339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University