View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_20 (Length: 294)
Name: NF7935_low_20
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 43168212 - 43168476
Alignment:
| Q |
19 |
atacgcgcgttgcatgggtgaaagaatttttgtatgttattatatattcaaaagtggtctaatatgcgctgtaaatataagtcacatataatttaaaact |
118 |
Q |
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| T |
43168212 |
atacgcgcgttgcattggggaaagaatttttgtacgttattatatattcaaaagtgatctaatatgcgctgtaaatataagtcacatataatttaaaact |
43168311 |
T |
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| Q |
119 |
atagagccctgtaaatata-ctacttttaaccacatttaaaattcttatacgtctgtatttttcattaaatggcgttcgaattagagcaatgtactcaaa |
217 |
Q |
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| T |
43168312 |
atagagccctgtaaatataactacttttaaccacatttaaaattcttatacatctgtatttatcactaaatggcgttcgaattagagcaatgtactcaaa |
43168411 |
T |
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| Q |
218 |
tctacatccacaacagccacaattatcgatgatcaatatctctttggtgagtacaatctctctct |
282 |
Q |
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| T |
43168412 |
tctacatccacaacagccacaattatcgatgatcaatatctctttggtgagtacaatctctctct |
43168476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 281
Target Start/End: Complemental strand, 43219958 - 43219698
Alignment:
| Q |
22 |
cgcgcgttgcatgggtgaaagaatttttgtatgttattatatattcaaaagtggtctaatatgcgctgtaaatataagtcacatataatttaaaactata |
121 |
Q |
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| T |
43219958 |
cgcgcgttgcatgggtgaaagaatttttgtatgttattatatattcaaaagcggtctaatatgcactgtaaatataagtcgcatataatttaaatctata |
43219859 |
T |
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| Q |
122 |
gagccctgtaaatata-ctacttttaaccacatttaaaattcttatacgtctgtatttttcattaaatggcgttcgaattagagcaatgtactcaaatct |
220 |
Q |
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| T |
43219858 |
gagccatgtaaatataactacttttaaccacatttaaaattcgtatacgtctgtattttgcactaaatggcgttcaaattagagcaatgtactcaaatct |
43219759 |
T |
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| Q |
221 |
acatccacaacagccacaattatcgatgatcaatatctctttggtgagtacaatctctctc |
281 |
Q |
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| T |
43219758 |
acatccacaacagccacaattatcgatgatcaatatgtctttggtgagtacaatctctctc |
43219698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 42859598 - 42859668
Alignment:
| Q |
194 |
tcgaattagagcaatgtactcaaatctacatccacaacagccacaattatcgatgatcaatatctctttgg |
264 |
Q |
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| T |
42859598 |
tcgaattagagcaatgttctctaatctacatccacggcaaccaatattattgattatcaatatctctttgg |
42859668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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