View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_22 (Length: 267)
Name: NF7935_low_22
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 31018917 - 31019077
Alignment:
| Q |
80 |
gatttatgttttctaacaactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccactttttcaagtctttggt |
179 |
Q |
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| T |
31018917 |
gatttatgttttctaacaactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccactttttcaagtctttggt |
31019016 |
T |
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| Q |
180 |
cgaattttcttcaacaatcttcctccccaactctaccaacaaactatgcattacaccacct |
240 |
Q |
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| T |
31019017 |
cgaattttcttgaacaatcttcctccccaactctaccaacaaactatgcattacacaacct |
31019077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 31028797 - 31028946
Alignment:
| Q |
82 |
tttatgttttctaacaactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccactttttcaagtctttggtcg |
181 |
Q |
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| T |
31028797 |
tttatgttttccaacaactactttaccatattctccaacattacattgttgaaatgttcgagggaccacaacctgctccactttctcaagtctttggtcg |
31028896 |
T |
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| Q |
182 |
aattttcttcaacaatcttcctccccaactctaccaacaaactatgcatt |
231 |
Q |
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| T |
31028897 |
aattttcttgaacaattttccggcccaactctaccaacaaactatgcatt |
31028946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 31497861 - 31497792
Alignment:
| Q |
96 |
caactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccacttt |
165 |
Q |
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| T |
31497861 |
caactactttaccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctccacttt |
31497792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 31503058 - 31502921
Alignment:
| Q |
94 |
aacaactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccactttttcaagtctttggtcgaattttcttcaa |
193 |
Q |
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| T |
31503058 |
aacaactactttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaattttcttgaa |
31502959 |
T |
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| Q |
194 |
caatcttcctccccaactctaccaacaaactatgcatt |
231 |
Q |
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| T |
31502958 |
caatttttcttcctagctcttccaacaaaccatgcatt |
31502921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 31149470 - 31149547
Alignment:
| Q |
88 |
ttttctaacaactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccacttt |
165 |
Q |
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| T |
31149470 |
ttttcaaacaaatactttaccatattctccgacataacattatagaattgcttgtggagccacatcctgctccacttt |
31149547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 33286679 - 33286746
Alignment:
| Q |
94 |
aacaactactttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctcca |
161 |
Q |
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| T |
33286679 |
aacaacaactttaccatattctccaacataacattgtagagttgttctgtggaccacaacctgctcca |
33286746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 31561745 - 31561681
Alignment:
| Q |
101 |
actttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctccacttt |
165 |
Q |
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| T |
31561745 |
actttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccacttt |
31561681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 33058707 - 33058767
Alignment:
| Q |
101 |
actttaccatattctccaacattacattgtcgaaatgttcggggaaccacaacctgctcca |
161 |
Q |
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| T |
33058707 |
actttaccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctcca |
33058767 |
T |
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