View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7935_low_24 (Length: 255)
Name: NF7935_low_24
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 5577943 - 5578170
Alignment:
| Q |
12 |
tattctgtgattcacaatttgtaatttgtagtatagtggcattttgttgcaaaattttagattatgcagggaattttaggggtttcatatgaataatgtt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5577943 |
tattctgtgattcacaatttgtaatttgtagtatagtggcattttgttgcaaaattttagactatgcagtgaattttaggggtttcatatgaataatgtt |
5578042 |
T |
|
| Q |
112 |
atgacttttatatggtattttgtttatttgttatgataagcattctgggtatttggaattcgttactggtttgtctcgattttcttgtgtgttaaatttc |
211 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5578043 |
atgatttttatatggtattttgtttatttgttatgataagcattctgggtatttggaatttgttactggtttgtctcgattttcttgtgtgttaaatttc |
5578142 |
T |
|
| Q |
212 |
tctgaaaacgtttatttagggtgaaatg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5578143 |
tctgaaaacgtttatttagggtgaaatg |
5578170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 3887235 - 3887312
Alignment:
| Q |
130 |
tttgtttattt-gttatgataagcattctgggtatttggaattcgttactggtttgtctcgattttcttgtgtgttaaa |
207 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| |||| | || ||| ||||||| ||||||| ||||||||| |
|
|
| T |
3887235 |
tttgtttattttgttatgttaagcattctgggtatttgaaatttg-taatgggttgtctcatttttcttttgtgttaaa |
3887312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University