View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_26 (Length: 245)
Name: NF7935_low_26
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_26 |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 55523430 - 55523201
Alignment:
| Q |
1 |
ggttcaaaccgcaatttaaaataagagacgtgcatgatttatattgagaataaataatgacctgtagtcatgatcaagatcagggatctctgatatgtta |
100 |
Q |
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| T |
55523430 |
ggttcaaaccgcaatttaaaataagagacgtgcgtgatttatattgagaataaataatgacctgtagtcatgatcaagatcagggatctctgatatgtta |
55523331 |
T |
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| Q |
101 |
gagttaggaaggtggcgcaaaaagaaagtgctttcccaattcaagtcattgatttcagactgagcaaactctaaacctttgcttgctaccatttctttga |
200 |
Q |
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| T |
55523330 |
aagttaggaaggtggcgcaaaaagaaagtgctttcccaatccaagtcattaatttcagactgagcaaactctaaacctttgcttgctaccatttctttga |
55523231 |
T |
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| Q |
201 |
acctttgctccatacgcttcttgtagtttt |
230 |
Q |
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| T |
55523230 |
acctttgctccatacgcttcttgtagtttt |
55523201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 8926626 - 8926457
Alignment:
| Q |
58 |
tgacctgtagtcatgatcaagatcagggatctctgatatgttagagttaggaaggtggcgcaaaaagaaagtgctttcccaattcaagtcattgatttca |
157 |
Q |
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| T |
8926626 |
tgacctgtaatcttcatcaagatctgggatctctgaaatattagaagaaggaagatggcgcaaaaagaaagtgctttcccaatccaaatcatttatttct |
8926527 |
T |
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| Q |
158 |
gactgagcaaactctaaacctttgcttgctaccatttctttgaacctttgctccatacgcttcttgtagt |
227 |
Q |
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| T |
8926526 |
gactgaacacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagt |
8926457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 30433 - 30469
Alignment:
| Q |
179 |
ttgcttgctaccatttctttgaacctttgctccatac |
215 |
Q |
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|||||| ||||||||||||| |||||||||||||||| |
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| T |
30433 |
ttgcttactaccatttctttaaacctttgctccatac |
30469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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