View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_5 (Length: 625)
Name: NF7935_low_5
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Complemental strand, 193024 - 192418
Alignment:
| Q |
18 |
agtagcagcagtggcaataaaggaatcaagtttttgaaaagaactttgtcattcacagatgtttctatttcca------------attccaatgtggaca |
105 |
Q |
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| T |
193024 |
agtagcagcagtggcaataaaggaatcaagtttttgaaaagaactttgtcattcacagatgtttctatttccatttccaattccaattccaatgtggaca |
192925 |
T |
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| Q |
106 |
tagttccaaaaggttttctagctgtttgtgttgggaaagagctcaagagattcattattccaatggattaccttaaacatcaagcatttgaggtgttgct |
205 |
Q |
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| T |
192924 |
tagttccaaaaggttttctagctgtttgtgttgggaaagagctcaagagattcattattccaatggattaccttaaacatcaagcatttgaggtgttgct |
192825 |
T |
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| Q |
206 |
acaagaagctgaagaggagtttggtttccaacaagagggtgtgctcaaaattccatgtcaagtatcaatgtttgagaaaatattgaaggttgtggaagat |
305 |
Q |
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| T |
192824 |
acaagaagctgaagaggagtttggtttccaacaagagggtgtgctcaaaattccatgtcaagtatcaatgtttgagaaaatattgaaggttgtggaagat |
192725 |
T |
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| Q |
306 |
aaaaaagaagccttaaacttgcatgagtttggatttggtggagagaattgtgatgttactcccactcatcatgctcaagtttgtagatgatattaattaa |
405 |
Q |
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| T |
192724 |
aaaaaagaagccttaaacttgcatgagtttggatttggtggagagaattgtgatgttactcccactcatcatgctcaagtttgtagatgatattaattaa |
192625 |
T |
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| Q |
406 |
ttcttatttatgtatgcttttctagtttttcttttgatatgtgaaaggcaatgttgattgattaaaaagaagtgacaattgttaatccattatgtttcat |
505 |
Q |
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| T |
192624 |
ttcttatttatgtatgcttttctagtttttcttttgatatgtgaaaggcaatgttgattgattaaaaagaagtgacaattgttaatccattatgtttcat |
192525 |
T |
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| Q |
506 |
aataatgctatatannnnnnnnnnnnaagcagagctacgtatattagataattaaggttctctttgaatggaattgttggacaagctagctatgtaccat |
605 |
Q |
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| T |
192524 |
aataatgctatatatttttgttttttaagcagagctatgtatattagataattaaggttctctttgaatggaattgttggacaagctagctatgtaccat |
192425 |
T |
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| Q |
606 |
atatatt |
612 |
Q |
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| T |
192424 |
atatatt |
192418 |
T |
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