View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7935_low_6 (Length: 613)

Name: NF7935_low_6
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7935_low_6
NF7935_low_6
[»] chr7 (2 HSPs)
chr7 (70-595)||(393693-394249)
chr7 (19-63)||(36029613-36029657)
[»] chr1 (5 HSPs)
chr1 (13-133)||(17611146-17611268)
chr1 (17-126)||(13059921-13060033)
chr1 (26-129)||(41072794-41072901)
chr1 (13-96)||(51051845-51051925)
chr1 (24-63)||(19475810-19475849)
[»] scaffold0839 (1 HSPs)
scaffold0839 (13-133)||(4309-4432)
[»] chr4 (9 HSPs)
chr4 (13-133)||(17256540-17256662)
chr4 (23-129)||(30029445-30029553)
chr4 (23-129)||(30045714-30045822)
chr4 (13-93)||(19729778-19729858)
chr4 (13-93)||(3029992-3030071)
chr4 (32-133)||(30059441-30059544)
chr4 (1-97)||(54131776-54131872)
chr4 (13-65)||(24426284-24426336)
chr4 (29-129)||(17221056-17221160)
[»] chr3 (9 HSPs)
chr3 (14-130)||(34733574-34733691)
chr3 (13-123)||(41540979-41541090)
chr3 (13-97)||(19250626-19250710)
chr3 (13-125)||(10437846-10437961)
chr3 (17-133)||(30653342-30653459)
chr3 (1-125)||(36660545-36660674)
chr3 (13-129)||(13612339-13612454)
chr3 (14-76)||(9349594-9349656)
chr3 (80-133)||(13083534-13083585)
[»] chr2 (4 HSPs)
chr2 (13-128)||(28143028-28143145)
chr2 (13-133)||(735000-735123)
chr2 (13-133)||(25851129-25851251)
chr2 (29-133)||(44185705-44185811)
[»] chr5 (3 HSPs)
chr5 (1-97)||(33642111-33642207)
chr5 (13-119)||(30649459-30649567)
chr5 (1-97)||(13610629-13610725)
[»] chr6 (2 HSPs)
chr6 (13-133)||(7339281-7339400)
chr6 (13-97)||(29027727-29027811)
[»] scaffold0638 (1 HSPs)
scaffold0638 (13-126)||(3352-3468)
[»] scaffold0578 (1 HSPs)
scaffold0578 (24-63)||(6663-6702)
[»] scaffold0153 (1 HSPs)
scaffold0153 (38-133)||(33235-33332)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 70 - 595
Target Start/End: Complemental strand, 394249 - 393693
Alignment:
Q  70 ttgattttccaattaatgatttttgttttaattaatttgttgtcaaagtgaaagtgtgtggtat----------------caaaaatagaagtctaagag 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||| ||||||||    
T  394249 ttgattttccaattaatgatttttgttttaattaatttgttgtcaaagtgaaagtgtgtggtataatatatttgtcgtatcaaaaatagaaatctaagag 394150  T
Q  154 caaatatttttaaatagcttaatatctagtaatactcgtgtaacggatactaaagtatttttgtaggagatacttaagtacaagcttttagtgaggcttg 253  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  394149 caaatatttttaaataccttaatatctagtaatactcgtgtaacggatacttaagtatttttgtaggagatacttaagtacaagcttttagtgaggcttg 394050  T
Q  254 attaggcctcacacgacagttatggtgagatagacggagtcctccagatttggagcggatgaagtgcaatacagatggagctttaatgcttaaggataat 353  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  394049 agtaggcctcacacgacagttatggtgagatggacggagtcctccagatttggagcagatgaagtgcaatacagatagagctttaatgcttaaggataat 393950  T
Q  354 taagttgtgtgtggtgaagtaattcgtgatgattcgggtagctggcgaaccgtattctcttgaaatttgggcgcct------ttt-----gc----catt 438  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||      |||     ||    ||||    
T  393949 taagttgtgtgtggtgaagtaattcgtaatgattcgggtagctggcgaaccggattctctcgaaatttgggcgcctgcttgattttaatggcaaagcatt 393850  T
Q  439 gggggattttgacaatacttcaagtggcttggaataaaggatttcgtcgcggcagtagctctggagctcatttaaacgagtgtccttcatctcacccgtg 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  393849 gggggattttgacaatacttcaagtggcttggaataaaggatttcgtcacggcagtagatctggagctcatttaaacgagtgtccttcatctcacccgtg 393750  T
Q  539 tgctcctattgtcacccatatcaatcgccttagaatgtgggattggtaagtcgtggt 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  393749 tgctcctattgtcacccatatcaatcgccttagaatgtgggattggtaagtcgtggt 393693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36029613 - 36029657
Alignment:
Q  19 attgtcgtattacttaaataaaaatcttctcgacatgaaataaaa 63  Q
    |||||||||||| ||||||||||| ||||||| || |||||||||    
T  36029613 attgtcgtattatttaaataaaaaacttctcgtcacgaaataaaa 36029657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 17611146 - 17611268
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaatt--aatttgtt 110  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| | ||||| | |||||||||||||||||| | |   ||||||||    
T  17611146 tatacaattgtcgtaatacttaaataaaaatcttctcttcatgaaataaaatataactagatttcctaattaatgatttttgtttgattagaaatttgtt 17611245  T
Q  111 gtcaaagtgaaagtgtgtggtat 133  Q
    |||||| ||||||||||||||||    
T  17611246 gtcaaaatgaaagtgtgtggtat 17611268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 13060033 - 13059921
Alignment:
Q  17 caattgtcgtattacttaaataaaaatc-ttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtc 113  Q
    ||||||||||| ||||||||||||||   |||||  ||||||||||||||||||| ||||| | |||||| |||||||||||  | | ||||||||||||    
T  13060033 caattgtcgtagtacttaaataaaaaaaattctcttcatgaaataaaatataattggatttcctaattaaagatttttgtttgattagtaatttgttgtc 13059934  T
Q  114 aaagtgaaagtgt 126  Q
    |||||||||||||    
T  13059933 aaagtgaaagtgt 13059921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 41072901 - 41072794
Alignment:
Q  26 tattacttaaataaaaatcttctcgacatgaaataaaa--tataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtgaa 121  Q
    |||||| || ||||||||||||||  ||||||||||||  ||||||| |||||   ||||||||||||||||||  | | ||||||||||||||||| ||    
T  41072901 tattacgtagataaaaatcttctcatcatgaaataaaatatataattggatttcttaattaatgatttttgtttcattagtaatttgttgtcaaagtaaa 41072802  T
Q  122 agtgtgtg 129  Q
    ||| ||||    
T  41072801 agtatgtg 41072794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 51051925 - 51051845
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt 96  Q
    |||| |||||||| |||||| |||||||||||||||   |||| |||||||||||| |  |||| | |||||||||||||||||    
T  51051925 tatataattgtcgcattactcaaataaaaatcttct---catggaataaaatataactgaatttcctaattaatgatttttgtt 51051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 19475810 - 19475849
Alignment:
Q  24 cgtattacttaaataaaaatcttctcgacatgaaataaaa 63  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  19475810 cgtattacttaaataaaaaacttctcgtcatgaaataaaa 19475849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0839 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 4432 - 4309
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttc--tcgacatgaaataaaatataatttgattttccaattaatgatttttgttt-taattaatttgt 109  Q
    ||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||| | ||||||| |||||||||||||| ||| | | ||||||||    
T  4432 tatacaattgtcgtattacttaaatgaaaatcttcaatcgtcatgaaataaaatataaatggattttctaattaatgatttttttttattagtaatttgt 4333  T
Q  110 tgtcaaagtgaaagtgtgtggtat 133  Q
    | |||||||||||||| |||||||    
T  4332 tatcaaagtgaaagtgagtggtat 4309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 17256540 - 17256662
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgtt 110  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||  |||||||| ||||||||||| ||||||  | | ||| |||||    
T  17256540 tatacaattgttgtattacttaaataaaaatcttatcgtcatgaaataaaatataacatgattttctaattaatgattattgtttggttagtaacttgtt 17256639  T
Q  111 gtcaaagtgaaagtgtgtggtat 133  Q
    ||||| |||||||||||| ||||    
T  17256640 gtcaaggtgaaagtgtgtagtat 17256662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 30029553 - 30029445
Alignment:
Q  23 tcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtga 120  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  |||| | || |||||||||||||||  | | |||||||||||| ||||||    
T  30029553 tcgtgttacttaaataaaaatcttctcgtcatgaaataaaatataactgaatttcctaactaatgatttttgtttgattagtaatttgttgtccaagtga 30029454  T
Q  121 aagtgtgtg 129  Q
    |||||||||    
T  30029453 aagtgtgtg 30029445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 30045822 - 30045714
Alignment:
Q  23 tcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtga 120  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |  |||| | || |||||||||||||||  | | |||||||||||| ||||||    
T  30045822 tcgtgttacttaaataaaaatcttctcgtcatgaaataaaatataactgaatttcctaactaatgatttttgtttgattagtaatttgttgtccaagtga 30045723  T
Q  121 aagtgtgtg 129  Q
    |||||||||    
T  30045722 aagtgtgtg 30045714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 19729778 - 19729858
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 93  Q
    ||||| |||||||||| ||| |||||| |||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||    
T  19729778 tatacgattgtcgtatcactaaaataataatcttctcgtcatgaaataaactataacttgattttctaattaatgattttt 19729858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 3029992 - 3030071
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgattttt 93  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||  ||||   ||||||||||||||    
T  3029992 tatacaattgttgtattacttaaataaaaat-ttctcgtcatgaagtaaaatataattgaatttcttaattaatgattttt 3030071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 30059544 - 30059441
Alignment:
Q  32 ttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtcaaagtgaaagtgtgtg 129  Q
    ||||||||||||||||| | ||||||||| |||||||    |||| | ||||||||||||||||||  | | |||||| ||||| |||||||||||||||    
T  30059544 ttaaataaaaatcttcttgtcatgaaatataatataacggaatttcctaattaatgatttttgtttgattagtaatttattgtccaagtgaaagtgtgtg 30059445  T
Q  130 gtat 133  Q
    ||||    
T  30059444 gtat 30059441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 54131776 - 54131872
Alignment:
Q  1 aattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 97  Q
    ||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||    
T  54131776 aattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactgaattttctaattaatgatttttgttt 54131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 24426284 - 24426336
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaata 65  Q
    ||||||||| ||| |||||||||||||||||||||||  ||||||||||||||    
T  24426284 tatacaattatcgcattacttaaataaaaatcttctcttcatgaaataaaata 24426336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 17221160 - 17221056
Alignment:
Q  29 tacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaat----taatttgttgtcaaagtgaaagt 124  Q
    ||||||| |||| ||||||||  ||| ||||||||||||| | |||||   |||||||||||||||||| | |    ||||||||||||||||| |||||    
T  17221160 tacttaactaaacatcttctcatcataaaataaaatataactggatttattaattaatgatttttgtttgattagtataatttgttgtcaaagtaaaagt 17221061  T
Q  125 gtgtg 129  Q
     ||||    
T  17221060 atgtg 17221056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 34733574 - 34733691
Alignment:
Q  14 atacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgttg 111  Q
    |||||||| ||||||||||||||||||||| |||||  ||||||||||||||||  |  |||||  |||||||||||||||||| |  | ||||||||||    
T  34733574 atacaattatcgtattacttaaataaaaat-ttctcatcatgaaataaaatatatctgaattttataattaatgatttttgtttgatcagtaatttgttg 34733672  T
Q  112 tcaaagtgaaagtgtgtgg 130  Q
    |||||||||||||||||||    
T  34733673 tcaaagtgaaagtgtgtgg 34733691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 41540979 - 41541090
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgtt 110  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| || |  |||| | ||||||||| || |||||||  | |||||||||    
T  41540979 tatacaattgttgtattacttaaataaaaatcttctcgtcatgaaattaaataaaactgaatttcctaattaatga-ttctgttttattagtaatttgtt 41541077  T
Q  111 gtcaaagtgaaag 123  Q
    |||||||||||||    
T  41541078 gtcaaagtgaaag 41541090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 19250626 - 19250710
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 97  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||| |||||||||  | ||||| | ||||||||||||||||||    
T  19250626 tatacaattttcgtattacttaaataaaactcttctcgttatgaagtaaaatatatctggatttcctaattaatgatttttgttt 19250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 10437961 - 10437846
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttc--tcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaat--taatttg 108  Q
    ||||||||||||||||||||||||  |||| ||||  ||  ||||||||||||||||  | ||||||| ||||||||||||| |||| | |  |||||||    
T  10437961 tatacaattgtcgtattacttaaacgaaaaccttcaatcttcatgaaataaaatatatatggattttctaattaatgatttt-gtttgattagtaatttg 10437863  T
Q  109 ttgtcaaagtgaaagtg 125  Q
    |||||||||||||||||    
T  10437862 ttgtcaaagtgaaagtg 10437846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 30653459 - 30653342
Alignment:
Q  17 caattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgttgtca 114  Q
    |||||| |||||||||||||||||||||||| |  ||| |||| ||||| ||  ||| ||| | |||||||||||||||||  | | | |||| ||||||    
T  30653459 caattgacgtattacttaaataaaaatcttcacatcataaaatgaaatagaa-ctgaatttgctattaatgatttttgtttcattagtcattttttgtca 30653361  T
Q  115 aagtgaaagtgtgtggtat 133  Q
    |||||||||||||||||||    
T  30653360 aagtgaaagtgtgtggtat 30653342  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 36660545 - 36660674
Alignment:
Q  1 aattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaat-aaaatataatttgattttccaat---taatgatttttgtt 96  Q
    ||||||||||  |||||||||| | |||||| ||||||| ||| |||||| |||||||| ||||||||| | ||||| | |||   |||| |||||||||    
T  36660545 aattaataaaattatacaattgccatattacataaataagaattttctcgtcatgaaataaaaatataaatggatttcctaataactaataatttttgtt 36660644  T
Q  97 tta-attaatttgttgtcaaagtgaaagtg 125  Q
    | | | ||||||||||||||||||||||||    
T  36660645 tgatagtaatttgttgtcaaagtgaaagtg 36660674  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 13612339 - 13612454
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaattaatttgttgt 112  Q
    ||||||| ||| |||||||||||||| |||||| | |  ||||||||||| ||||||| ||||| | ||||||||| |||| || | | ||||||||||     
T  13612339 tatacaactgttgtattacttaaatataaatctccccatcatgaaataaagtataattggatttccaaattaatgaatttt-ttattactaatttgttga 13612437  T
Q  113 caaagtgaaagtgtgtg 129  Q
     ||||||||| ||||||    
T  13612438 taaagtgaaaatgtgtg 13612454  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 9349594 - 9349656
Alignment:
Q  14 atacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattt 76  Q
    ||||||||||||||||| |||| |||||||||||||  | |||||| |||||||||| |||||    
T  9349594 atacaattgtcgtattagttaagtaaaaatcttctcatcgtgaaatcaaatataattggattt 9349656  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 13083534 - 13083585
Alignment:
Q  80 aattaatgatttttgttttaattaatttgttgtcaaagtgaaagtgtgtggtat 133  Q
    |||||||||||||| |||  | ||||||||||||||||||||||||||||||||    
T  13083534 aattaatgatttttattt--agtaatttgttgtcaaagtgaaagtgtgtggtat 13083585  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 28143028 - 28143145
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgtt 110  Q
    |||||||| ||||||||| ||||||||||||||| ||  ||| |||||||||||||||  |||| | ||||||| ||||||||||  | | |||||||||    
T  28143028 tatacaatagtcgtattaattaaataaaaatcttttcatcataaaataaaatataattgaatttcctaattaatcatttttgtttgattagtaatttgtt 28143127  T
Q  111 gtcaaagtgaaagtgtgt 128  Q
    ||||||||||||||||||    
T  28143128 gtcaaagtgaaagtgtgt 28143145  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 735000 - 735123
Alignment:
Q  13 tatacaattgtcgtattacttaaat-aaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgt 109  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||||||| |  |||| | |||| | |||||||||||||  | ||||||||    
T  735000 tatacaattgtcgtattacttaaataaaaaatcttctcatcaagaaataaaatataactgaatttcctaattgacgatttttgttttattagtaatttgt 735099  T
Q  110 tgtcaaagtgaaagtgtgtggtat 133  Q
    | ||||||||||||||||| ||||    
T  735100 tttcaaagtgaaagtgtgtagtat 735123  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 25851129 - 25851251
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaat---taatttgt 109  Q
    ||||||||||||||||||||||||||||||||||| || | |||||| ||||| || |  |||| | ||||||| |||||| | |||||   ||||||||    
T  25851129 tatacaattgtcgtattacttaaataaaaatcttcccgtcgtgaaattaaatacaactgaatttcctaattaataattttt-tgttaattagtaatttgt 25851227  T
Q  110 tgtcaaagtgaaagtgtgtggtat 133  Q
    |||||||||||||  |||||||||    
T  25851228 tgtcaaagtgaaaacgtgtggtat 25851251  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 44185705 - 44185811
Alignment:
Q  29 tacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaat--taatttgttgtcaaagtgaaagtgt 126  Q
    |||||||||| |||| |||||| |||||| | |||||||  |  ||||   |||||||||||||| ||||| |  || ||||||||||||||||||||||    
T  44185705 tacttaaatacaaatattctcgtcatgaagttaaatatacatgaatttcttaattaatgatttttattttactactagtttgttgtcaaagtgaaagtgt 44185804  T
Q  127 gtggtat 133  Q
    |||||||    
T  44185805 gtggtat 44185811  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33642111 - 33642207
Alignment:
Q  1 aattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 97  Q
    ||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| | ||||||| ||||||||||||||||||    
T  33642111 aattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactggattttctaattaatgatttttgttt 33642207  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 30649567 - 30649459
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttttaat--taatttgtt 110  Q
    |||||||||||| || ||||||||||||||  |||| | ||||||||||||||||| | ||||||| |||||||| ||||| ||| | |  |||||||||    
T  30649567 tatacaattgtcatagtacttaaataaaaaatttcttgtcatgaaataaaatataactcgattttctaattaatggtttttctttgatttgtaatttgtt 30649468  T
Q  111 gtcaaagtg 119  Q
    || ||||||    
T  30649467 gtgaaagtg 30649459  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13610629 - 13610725
Alignment:
Q  1 aattaataaacgtatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 97  Q
    ||||||||||  ||||||||||| ||  ||||| || || |||||||||  ||||||||||||||||| |  |||||| ||||||||||||||||||    
T  13610629 aattaataaaaatatacaattgttgtggtacttgaaaaataatcttctcttcatgaaataaaatataactgaattttctaattaatgatttttgttt 13610725  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 7339281 - 7339400
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt--taattaatttgtt 110  Q
    ||||||||||||||||||||||   |||||||||||   |||| ||||||||| || |  |||||| ||||||||||| ||||||  | | |||||||||    
T  7339281 tatacaattgtcgtattactta---aaaaatcttcttttcatggaataaaatacaactgaattttctaattaatgattgttgtttgattagtaatttgtt 7339377  T
Q  111 gtcaaagtgaaagtgtgtggtat 133  Q
    ||| |||||||| ||||||||||    
T  7339378 gtcgaagtgaaaatgtgtggtat 7339400  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 29027811 - 29027727
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgttt 97  Q
    |||||||||||||| ||| |||||||||||  |||| |   |||| |||||||||| | ||||| | || |||||||||||||||    
T  29027811 tatacaattgtcgtcttaattaaataaaaaatttcttgtagtgaagtaaaatataactggatttcctaactaatgatttttgttt 29027727  T

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Target: scaffold0638 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 3468 - 3352
Alignment:
Q  13 tatacaattgtcgtattacttaaataaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtt---ttaattaatttgt 109  Q
    |||||||| |||||| ||||||||||||||  |||||   | ||||||||| ||| || ||||||| |||||||| ||| ||||   ||| | |||||||    
T  3468 tatacaatcgtcgtagtacttaaataaaaaaattctcataaagaaataaaagatagttggattttctaattaatgttttgtgtttgattattaaatttgt 3369  T
Q  110 tgtcaaagtgaaagtgt 126  Q
    ||| |||||||||||||    
T  3368 tgttaaagtgaaagtgt 3352  T

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Target: scaffold0578 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 6663 - 6702
Alignment:
Q  24 cgtattacttaaataaaaatcttctcgacatgaaataaaa 63  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  6663 cgtattacttaaataaaaaacttctcgtcatgaaataaaa 6702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 33332 - 33235
Alignment:
Q  38 aaaaatcttctcgacatgaaataaaatataatttgattttccaattaatgatttttgtttta--attaatttgttgtcaaagtgaaagtgtgtggtat 133  Q
    ||||||||||| | |||| |||||||||||| | ||||| | | |||||||| ||| |||||  | ||||||| |||||||||||||| |||| ||||    
T  33332 aaaaatcttcttgtcatggaataaaatataaatggatttcctagttaatgatcttttttttattagtaatttgatgtcaaagtgaaagcgtgtagtat 33235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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