View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_7 (Length: 588)
Name: NF7935_low_7
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_7 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 386 - 588
Target Start/End: Complemental strand, 39253736 - 39253534
Alignment:
| Q |
386 |
aaaaatgaatatttaaaccgtatacttttcaaattaaaataagcaaaacaaaattgacatgtataattttgaaataagttttggaggataccaagcttac |
485 |
Q |
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| T |
39253736 |
aaaaatgaatatttaaaccgtatacttttcaaattaaaataagcaaaacaaaattgacatgtataatttttaaataagttttggaggataccaagcttac |
39253637 |
T |
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| Q |
486 |
tagtttaagaatttattatttagtactcgacccagactctattcatatatacaatgcatgttactctcttgttttatatggaagtcgtgcatatcctaaa |
585 |
Q |
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| T |
39253636 |
tagtttaagaatttattatttagtactcgacccagactctattcatatacacaatgcatgttactctcttgttttatatggaagtcgtgcatatcctaaa |
39253537 |
T |
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| Q |
586 |
tct |
588 |
Q |
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||| |
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| T |
39253536 |
tct |
39253534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 39254044 - 39253897
Alignment:
| Q |
19 |
aatgactcctctaaaatgtcatgctctgacaaattcaaggtcgtgaaagatttattnnnnnnntgttcgtgggaacagggtgaggactgggggctaaatg |
118 |
Q |
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| T |
39254044 |
aatgactcctctaaaatgtcatgctttgacaaattcaaggtcgtgaaagatttattaaaaaaatgttcatgg-aacagggtgagaactgggggctaaatt |
39253946 |
T |
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| Q |
119 |
acaaatttatgtctcatcaataatccgtagaagaagacttattaaataa |
167 |
Q |
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| T |
39253945 |
acaaatttatgtctcatcaataatccgtagaagaagacttattaaataa |
39253897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 137 - 257
Target Start/End: Complemental strand, 39253891 - 39253767
Alignment:
| Q |
137 |
aataatccgtagaagaagacttattaaataatttcatatgttcaattttcactnnnnnnntttgtaatgtcta----tttctcnnnnnnnnttgtaatgt |
232 |
Q |
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| T |
39253891 |
aataatccgtagaagaagacttattaaataatttcatccgttcaattttcactaaaaaaatttataatgtctatttctttctcaaaaaaaattgtaatgt |
39253792 |
T |
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| Q |
233 |
cagttaaccgactttaaattgttta |
257 |
Q |
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| T |
39253791 |
cagttaaccgactttaaattgttta |
39253767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 39248784 - 39248741
Alignment:
| Q |
31 |
aaaatgtcatgctctgacaaattcaaggtcgtgaaagatttatt |
74 |
Q |
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| T |
39248784 |
aaaatgtcatgctttgacaaattcaaggtcgtgaaagatttatt |
39248741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 546 - 582
Target Start/End: Complemental strand, 39248597 - 39248561
Alignment:
| Q |
546 |
ttactctcttgttttatatggaagtcgtgcatatcct |
582 |
Q |
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| T |
39248597 |
ttactctcttgttttatacggaagtcgtgcatatcct |
39248561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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