View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7935_low_9 (Length: 511)
Name: NF7935_low_9
Description: NF7935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7935_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 289 - 492
Target Start/End: Complemental strand, 40397857 - 40397649
Alignment:
| Q |
289 |
gacacttttttatgtaaatgcattataattttactttcaattattgtttgatattcaccaccatgtgcacttagttgctttgaagtttgaaccatattca |
388 |
Q |
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| T |
40397857 |
gacacttttttatgtaaatgcattataattttactttcaattattgtttgatattcaccaccatgtgcacttagttgctttgaagtttgaaccataatca |
40397758 |
T |
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| Q |
389 |
cgatcaatatatat-----atggaacatctacaacagctggaatccaaagtaacaaagtcaatgccaaagctatctgatagagactgtaatggttttcga |
483 |
Q |
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| T |
40397757 |
cgatcaatatatatatggtatggaacatctacaacagctggaatccaaagtaacaaagtcaatgccaaagctatctgatagagactgtaatggttttcga |
40397658 |
T |
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| Q |
484 |
agaatccta |
492 |
Q |
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||||||||| |
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| T |
40397657 |
agaatccta |
40397649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 40398029 - 40397868
Alignment:
| Q |
1 |
aatgagatctaacgaaagaagttagactttcacaactaaaatttgaatctaaaccaagacacatttagtgtttgatagtgtcttgaataaaattatcttt |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40398029 |
aatgagatctaacggaagaagttagactttcacaactaaaatttgaatctaaaccaagacacatttagtgtttaatagtgtcttgaataaaattatcttt |
40397930 |
T |
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| Q |
101 |
aagtgaagtgaacatatg-aaataaaaagattaaagatgttctaaagacatacaattgattt |
161 |
Q |
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||||||||||||| |||| ||| |||||| |||||| ||||||||||||||||||||||||| |
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| T |
40397929 |
aagtgaagtgaacctatgaaaaaaaaaaggttaaagttgttctaaagacatacaattgattt |
40397868 |
T |
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