View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7936_high_1 (Length: 723)
Name: NF7936_high_1
Description: NF7936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7936_high_1 |
 | |
|
| [»] chr8 (15 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 703; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Original strand, 2516408 - 2517130
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516408 |
tcattccacacacaggtatgcggccatggagtttcatattcaagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
2516507 |
T |
|
| Q |
101 |
tggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactatacttttcatgtcaacaaacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516508 |
tggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactatacttttcatgtcaacaaacata |
2516607 |
T |
|
| Q |
201 |
ttgaactaaaaaatttcgactgcatcacttatgtactgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516608 |
ttgaactaaaaaatttcgactgcatcacttatgtactgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatcca |
2516707 |
T |
|
| Q |
301 |
aatttattttttaacagatccacctagttgcaaaagacgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaactaaatggattc |
400 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516708 |
aatttattttttaacatatccacctggttgcaaaagatgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaactaaatggattc |
2516807 |
T |
|
| Q |
401 |
ttggtaatcatactcgttttcaagttacaacttacaacaaatcattcctaacccaagaattaagaaactattgtttgtttctgctggctgctaaaattct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2516808 |
ttggtaatcatactcgttttcaagttacaacttacaacaaatcattcctaacccaagaattaagaaactattgtttgtttctgctggctgctaaaatttt |
2516907 |
T |
|
| Q |
501 |
cttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516908 |
cttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaata |
2517007 |
T |
|
| Q |
601 |
taagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgacactgacaatg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2517008 |
taagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgacactgacaatg |
2517107 |
T |
|
| Q |
701 |
acaccggtaataatttgagaaaa |
723 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2517108 |
acaccggtaataatttgagaaaa |
2517130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 2512137 - 2512484
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| ||| ||||||| |||||||||||||| || ||||| ||||||||||||| |||||| ||||| |
|
|
| T |
2512137 |
tcattccacacacaggtatgcgaccatgtagtttcatgttcaagagtacggcatcaagtgtcttgcctccaacgttctcaaagtaaacgtcaattccttc |
2512236 |
T |
|
| Q |
101 |
tggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactata-cttttcatgtcaacaaacat |
199 |
Q |
| |
|
|||||||| ||| |||| | ||||||||||||||| |||| | | |||||| ||| | ||| | ||||||||| |||| |||| ||||||| |
|
|
| T |
2512237 |
tggaaagtgcctgatttccccaaattgatatccaccagttagttgagtgtctcgtgt---tacaaacgcagtaactatatttttttatgt---caaacat |
2512330 |
T |
|
| Q |
200 |
attgaactaaaaaatttcgactgcatcac--ttatgtactgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtat |
297 |
Q |
| |
|
|||||||| |||||||| ||||| || || | ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2512331 |
attgaact--aaaatttctcctgcaaaactgttctaaactgaccttttcaatgctgcatccaggtcttgttcttctttgtagttaatggcttcatcgtat |
2512428 |
T |
|
| Q |
298 |
ccaaatttattttttaacagatccacctagttgcaaaagacgtacattaaagtaaa |
353 |
Q |
| |
|
||||||||||| || ||||||||||||| ||| || |||| |||||||||||||| |
|
|
| T |
2512429 |
ccaaatttattcttcaacagatccacctggttccagaagatatacattaaagtaaa |
2512484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2432586 - 2432455
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432586 |
tcattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
2432487 |
T |
|
| Q |
101 |
tggaaagtacctaatttacataaattgatatc |
132 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
|
|
| T |
2432486 |
tggaaagtacctaatttacatacattgatatc |
2432455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2429604 - 2429473
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2429604 |
tcattccacacacaggtatccgcccatggagtttcatattcaagagtacagcatcaagtgtctttccccccacattctcaaagtaaatgtcaatgccttc |
2429505 |
T |
|
| Q |
101 |
tggaaagtacctaatttacataaattgatatc |
132 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |
|
|
| T |
2429504 |
tggaaagtatctagtttacataaattgatatc |
2429473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2435947 - 2435815
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||||| | ||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
2435947 |
tcattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagtaaatgtcaatgccttc |
2435848 |
T |
|
| Q |
101 |
tggaaagtacctaatttacataaattgatatcc |
133 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
2435847 |
tggaaagtacctaatatacataaattgatatcc |
2435815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 235 - 389
Target Start/End: Original strand, 2505708 - 2505862
Alignment:
| Q |
235 |
actgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacctagttgcaaa |
334 |
Q |
| |
|
||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
2505708 |
actgaccttttcaatgttgcattgaggtcttgctcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacctggttgcaaa |
2505807 |
T |
|
| Q |
335 |
agacgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaac |
389 |
Q |
| |
|
||| || || |||||||||||| | ||||||||| | || ||| ||||||||| |
|
|
| T |
2505808 |
agatatatttttaagtaaaggaaggccatatttttgcttgtgaatgaaaagaaac |
2505862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2496835 - 2496951
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
|||||||||| ||||||||||||| |||| | |||| ||| |||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
2496835 |
tcattccacatgcaggtatgcggccgtggactctcatgttcaagagtacagcatcaagtgtcttgcctccaacattctcaaagtaaatatcaatgccttc |
2496934 |
T |
|
| Q |
101 |
tggaaagtacctaattt |
117 |
Q |
| |
|
|| |||| ||| |||| |
|
|
| T |
2496935 |
agggaagtgcctgattt |
2496951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 2505516 - 2505650
Alignment:
| Q |
1 |
tcattccacacacaggtatgcggccatggagtttcatattcgagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttc |
100 |
Q |
| |
|
|||||||||||||||||||||| || || | | |||| ||| ||||||| |||||||||||||| || || || ||||||||||||| ||||||||||| |
|
|
| T |
2505516 |
tcattccacacacaggtatgcgaccttgtaatctcatgttcaagagtacggcatcaagtgtcttgccaccgacgttctcaaagtaaacatcaatgccttc |
2505615 |
T |
|
| Q |
101 |
tggaaagtacctaatttacataaattgatatccac |
135 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||||| |||| |
|
|
| T |
2505616 |
tggaaagtgcctgattcacataaaatgataaccac |
2505650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 1459501 - 1459414
Alignment:
| Q |
238 |
gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacct |
325 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
1459501 |
gaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacct |
1459414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 2429208 - 2429121
Alignment:
| Q |
238 |
gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacct |
325 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
2429208 |
gaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacct |
2429121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 238 - 325
Target Start/End: Complemental strand, 2432126 - 2432039
Alignment:
| Q |
238 |
gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacct |
325 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
2432126 |
gacctttttaaagctgcattgaggtcaggttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccacct |
2432039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 238 - 328
Target Start/End: Complemental strand, 2435561 - 2435471
Alignment:
| Q |
238 |
gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacctagt |
328 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
2435561 |
gacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacctagt |
2435471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 614 - 663
Target Start/End: Original strand, 2515727 - 2515776
Alignment:
| Q |
614 |
aagaccttgattgttgttattgtaattagggaaattcaaaacctatgaag |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
2515727 |
aagaccttgattgttgttattgtaattagggaaatttagaacctatgaag |
2515776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 637
Target Start/End: Original strand, 2506022 - 2506128
Alignment:
| Q |
531 |
agaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgt |
630 |
Q |
| |
|
|||||||||||||| ||||| | |||||| |||||||||| ||| | | | |||||| ||||| |||||| || |||||||| ||||||||||||| |
|
|
| T |
2506022 |
agaattgaaattttgtaataaaattaggctaattctagtattttggttacattacagtaatttcgtaatatagctagtgagcaaaaaccttgattgttga |
2506121 |
T |
|
| Q |
631 |
tattgta |
637 |
Q |
| |
|
||||||| |
|
|
| T |
2506122 |
tattgta |
2506128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 2512635 - 2512692
Alignment:
| Q |
488 |
ctgctaaaattctcttcgattaggctaactatgt-aacacttgtagaattgaaatttt |
544 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
2512635 |
ctgctacaattctcttcaattaggctaactatgtaaacatttctagaattgaaatttt |
2512692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University