View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7936_low_1 (Length: 863)
Name: NF7936_low_1
Description: NF7936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7936_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 476 - 857
Target Start/End: Original strand, 4223192 - 4223578
Alignment:
| Q |
476 |
tattcaacatttaatcttcttttttcttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaatt |
575 |
Q |
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| T |
4223192 |
tatttaacatttaatctt--ttttcctaatatatttgtttcttc-ctcaaaacttttgcggttaaaatagcaaagctaaggcctcagataaacctcaatt |
4223288 |
T |
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| Q |
576 |
atgttataa-----ctaccaaatataatctaaaaggctcatcaaattttttatgtcaatttcattacaattggttattccactcaaaattttagctgcac |
670 |
Q |
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| T |
4223289 |
atgttataaattaactaccaaatacaaactaaaaggctcatgaaattttttatgtaaatttcattacaattggttattccactcaaaattttagctgcac |
4223388 |
T |
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| Q |
671 |
tttttatgtgctagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaa-cacaatcaattaccactaagcttttttagcttc |
769 |
Q |
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| T |
4223389 |
tttttatgtactagttcacattacagcatgaccatatttaggaagcaaattagaattcaaccacaattacaatcaattaccactaagcttttttagcttc |
4223488 |
T |
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| Q |
770 |
atatatgtccacca--aaccgcaaaccctatcccatttctattatcatactatttattccttctttttaattaatataagaataatctag |
857 |
Q |
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| T |
4223489 |
atatatgtccaccatcaaccgaaaaccctatcccatttctattataatactatttattccttctttttaattaatataagaaaaatctag |
4223578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 277 - 459
Target Start/End: Original strand, 4222953 - 4223146
Alignment:
| Q |
277 |
ttgatcaatcttgtttagcacaatcttaaaacttttcacagtaaccatattcatctagccacacaaatgaaattactttt-aacatgaagaaaaattcct |
375 |
Q |
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| T |
4222953 |
ttgatcaatcttggttagcacaatcttaaaacttttcacggtaaccatattcatcctgcaacacaaatgaaattacttttcaacttgaagaaaaattcct |
4223052 |
T |
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| Q |
376 |
aaaccct----------cttgaagaactaaaaatgaccgaaattattttgtaatttctaactatctttgtgctttaacatattcaacatttctt |
459 |
Q |
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| T |
4223053 |
aaatcctccataaaacgccttaagaactaaaaatgacctaaattattttgtaatttctaaccaccgtcatgctttaacatattcaacatttctt |
4223146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 4222801 - 4222913
Alignment:
| Q |
144 |
tgatgaatcatttatgaatgttgaatattgcagtaacgatccggttaatacaaatattggtttatttagtcaaacagatatttgatttatcaacgttctg |
243 |
Q |
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| T |
4222801 |
tgataaatcatttatgaatgctgaatattgtagtaaccatccggtttatataaatattggtttatttagtcaagaaaatatttggtttatcaacattctg |
4222900 |
T |
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| Q |
244 |
gtttataaaatgt |
256 |
Q |
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| T |
4222901 |
gtttagaaaatgt |
4222913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 303 - 594
Target Start/End: Complemental strand, 43002996 - 43002701
Alignment:
| Q |
303 |
taaaacttttcacagtaaccatattcatctagccacacaaatgaaattacttttaacatgaagaaaaattcctaaaccctct-------tgaagaactaa |
395 |
Q |
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| T |
43002996 |
taaaacttttcacggtaacaatattcatccagcaacacaaatgaaattactttcatcatgaagaaaaattcctaattcctccaaacgccttaagaactaa |
43002897 |
T |
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| Q |
396 |
aaatgaccgaaattattttgtaatttctaactatctttgtgctttaacatattcaacatttcttgtaagnnnnnnnnnnntattcaacatttaatcttct |
495 |
Q |
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| T |
43002896 |
aaatgactgaaattattttgtaatttctaactaccttcgtgctttaacatattcaacatttcttgtaagaaaaaaaa----attcaaccttcaatcttct |
43002801 |
T |
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| Q |
496 |
ttttt--cttatatatttgtttcttttctcaaaacttttgcggttacaactgcaaagctaagggctcagataaacctcaattatgttataactaccaaat |
593 |
Q |
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| T |
43002800 |
ttttttccttatatatttgtttcttc-ctcaatacttttgcggttacaactgcaaagctaaaggctcagataagcctcaattatgttataactagcaaat |
43002702 |
T |
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