View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7936_low_3 (Length: 685)
Name: NF7936_low_3
Description: NF7936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7936_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 1178086 - 1178388
Alignment:
| Q |
18 |
gtaacaatatcgcttctcatcattgttgatttatgttcatagctttcgttttataatcatatattctatttgttttccattctagattacacgtaagtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178086 |
gtaacaatatcgcttctcatcattgttgatttatgttcatagctttcgttttataatcatatattctatttgttttccattctagattacacgtaagtca |
1178185 |
T |
|
| Q |
118 |
tcacgattttcttttctgcaagnnnnnnntatcttctttttcgtcctatttatatttatattgcttcttctggttacaacttgagcacctttatgttttt |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178186 |
tcacgattttcttttctgcaagaaaaaaatatcttctttttcgtcctatttatatttatattgcttcttctggttacaacttgagcacctttatgttttt |
1178285 |
T |
|
| Q |
218 |
attgaatctgtataaattaaactatttatttcaccgaaaccatattatataatttcatgttgtatcttcatataccggttattgcaccgttaaaattacc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1178286 |
attgaatctgtataaattaaactatttatttcaccgaaaccatattatataatttcatgttgtatcttcatataccggttattgcactgttaaaattacc |
1178385 |
T |
|
| Q |
318 |
ata |
320 |
Q |
| |
|
||| |
|
|
| T |
1178386 |
ata |
1178388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 400 - 677
Target Start/End: Original strand, 1178468 - 1178745
Alignment:
| Q |
400 |
ctatcaatatcaatgagagcttgaggtattaatagtattgccttccctctcctaaagaatgaagcacaaacatacaaacatttacacgttgacaccgata |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1178468 |
ctatcaatatcaatgagagcttgaggtattaatagtattgccttccctctcccaaagaaagaagcacaaacatacaaacacttacacgttgacactgata |
1178567 |
T |
|
| Q |
500 |
caattttgagaaaattacataaacaaatataagtacatgtgtcaatgccgtatagggtcagtaccagacattgacatgtgtcgtacaccggaacacacca |
599 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178568 |
caatcttgagaaaattacataaacaaatataagtacatgtgtcaatgccgtatagtgtcaggaccagacattgacatgtgtcgtacaccggaacacacca |
1178667 |
T |
|
| Q |
600 |
tgatcataaggggcggttctatatcaagctattacgcttctctatttcttttactttaaaattgcgacttttcatctc |
677 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1178668 |
tgatcataaggggcggttttataacaagctattacgcttctctatttcttttactttaaaattgcaacttttcatctc |
1178745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 432 - 642
Target Start/End: Original strand, 1191842 - 1192053
Alignment:
| Q |
432 |
tagtattgccttccctctcctaaagaatgaagcacaaacatacaaacatttacacgttgacaccgatacaattttgagaaaattacataaacaaatataa |
531 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1191842 |
tagtattgccttccctctcccaaagaatgaagcacagacacacaaacatttacacgttgacaccgatctaatcttgagaaaattacataaacaaatataa |
1191941 |
T |
|
| Q |
532 |
gtacatgtgtcaatgccgtatagggtcagtaccagacattgacatgtgtcgtacaccggaacacaccat-gatcataaggggcggttctatatcaagcta |
630 |
Q |
| |
|
|| | |||| || | || | ||| || | |||||| |||||||| ||||||| ||||||||| | ||||||||| | |||||||||||||||||| |
|
|
| T |
1191942 |
tcacttatgtcggtgtcacatcgtgtcggtgtcggacattaacatgtgttgtacaccagaacacaccgtggatcataagtgccggttctatatcaagcta |
1192041 |
T |
|
| Q |
631 |
ttacgcttctct |
642 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
1192042 |
ttacacttctct |
1192053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 1191429 - 1191508
Alignment:
| Q |
217 |
tattgaatctgtataaattaaactatttatttcaccgaaaccatattatataatttcatgttgtatcttcatataccggtt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
1191429 |
tattgaatctgtataaattaaactatttatt-caccaaaaccatattatataatctcatattgtatcttcatatacaggtt |
1191508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1191354 - 1191402
Alignment:
| Q |
30 |
cttctcatcattgtt-gatttatgttcatagctttcgttttataatcat |
77 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
1191354 |
cttctcatcattgtttgatttgtgttcatagctttcggtttataatcat |
1191402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 521
Target Start/End: Original strand, 10031563 - 10031601
Alignment:
| Q |
483 |
acacgttgacaccgatacaattttgagaaaattacataa |
521 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
10031563 |
acacgttgacaccgataaaattttgagaaaatgacataa |
10031601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University