View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7936_low_5 (Length: 509)

Name: NF7936_low_5
Description: NF7936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7936_low_5
NF7936_low_5
[»] chr6 (8 HSPs)
chr6 (21-500)||(8909505-8909982)
chr6 (21-90)||(18691939-18692009)
chr6 (21-169)||(8848285-8848443)
chr6 (119-174)||(7457123-7457178)
chr6 (120-194)||(19214929-19215003)
chr6 (128-191)||(13548491-13548554)
chr6 (103-194)||(31876899-31876990)
chr6 (42-90)||(18700614-18700663)
[»] chr5 (3 HSPs)
chr5 (20-409)||(40882066-40882454)
chr5 (21-120)||(40802356-40802455)
chr5 (471-500)||(40882468-40882497)
[»] chr7 (2 HSPs)
chr7 (44-194)||(6768504-6768653)
chr7 (117-174)||(26646020-26646077)
[»] chr8 (6 HSPs)
chr8 (21-90)||(23126717-23126787)
chr8 (20-85)||(21349439-21349504)
chr8 (126-167)||(27817124-27817165)
chr8 (21-84)||(27815513-27815576)
chr8 (125-167)||(27815441-27815483)
chr8 (21-91)||(29634494-29634564)
[»] chr3 (1 HSPs)
chr3 (21-194)||(6079717-6079895)
[»] chr4 (1 HSPs)
chr4 (117-174)||(51030293-51030350)
[»] scaffold0164 (1 HSPs)
scaffold0164 (120-194)||(5037-5111)
[»] chr2 (1 HSPs)
chr2 (124-194)||(24864031-24864101)
[»] scaffold0017 (1 HSPs)
scaffold0017 (122-163)||(38722-38763)


Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 21 - 500
Target Start/End: Complemental strand, 8909982 - 8909505
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaataaaagtgataagttaaaaaagaaaatgttactttcgagtagccagttattccatcaataaaaagatatag 120  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  8909982 tttctactgcgcaaacgcatatatctaaataaaagtgataggttaaaaaagaaaatgttacttttgagtagc-agttattccatcaataaaaggatatag 8909884  T
Q  121 taagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataaaacatactcaccataaaatagaaata 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8909883 taagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataaaacatactcaccataaaatagaaata 8909784  T
Q  221 taaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcactttacatttccgaaatggaataaagctagttatataatcactt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8909783 taaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcactttacatttctgaaatggaataaagctagttatataatcactt 8909684  T
Q  321 tatcgaagtgtgtttcaaaacatgtatatatacttacattttgagctttctcctagtaatgttttctgttctctacttcttatgtttccttggtcagaga 420  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  8909683 tatcaaagtgtgtttcaaaacatgta--tatacttacattttgagctttctcctagtaatgttttctattctctacttcttatgttttcttggttagaga 8909586  T
Q  421 aaatttgatggttatagcaaaggataagagtgattccgtggcc-nnnnnnncactaccattttccttgtctgcttcttctc 500  Q
    ||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||    
T  8909585 aaatttgatggttatagcaaaggataacagtgattccgtggccttttttttcactaccattttccttgtctgcttcttctc 8909505  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 18691939 - 18692009
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaat-aaaagtgataagttaaaaaagaaaatgttactttcgagta 90  Q
    |||||||||||||||| ||| ||||||||| |||||||||| ||| ||||||||||||||||||| |||||    
T  18691939 tttctactgcgcaaacacatgtatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagta 18692009  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 8848285 - 8848443
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaat-aaaagtgataagttaaaaaagaaaatgttactttcgagtagccagttattccatcaataaaaagat--- 116  Q
    |||||||| ||||||| ||| ||||||||| |||||||||| ||| ||||||||||| ||||||| |||||   || |||| ||| |||||| ||||       
T  8848285 tttctacttcgcaaacacatgtatctaaattaaaagtgataggttgaaaaagaaaatattacttttgagta-atagctatttcataaataaagagatata 8848383  T
Q  117 -----atagtaagagaataagagaggatt--agaacacatcataattgttattttttaat 169  Q
         ||||||||||||||||||||||||  |||||||| ||||||| |||||| |||||    
T  8848384 aatagatagtaagagaataagagaggattagagaacacaccataattattatttattaat 8848443  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 7457123 - 7457178
Alignment:
Q  119 agtaagagaataagagaggattagaacacatcataattgttattttttaatacaaa 174  Q
    ||||| |||||||||||||||||||||||| | |||||||||||  ||||||||||    
T  7457123 agtaaaagaataagagaggattagaacacaccgtaattgttattaattaatacaaa 7457178  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 19214929 - 19215003
Alignment:
Q  120 gtaagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataa 194  Q
    ||||| |||||||||||||||||||||||  ||||||||||||| |||||  ||| | || || |||||||||||    
T  19214929 gtaagtgaataagagaggattagaacacactataattgttatttattaattgaaatagttgtaaacataagataa 19215003  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 13548491 - 13548554
Alignment:
Q  128 ataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataaga 191  Q
    |||||||||||||||||||||  ||||||||||||| ||||| |||| | || || ||||||||    
T  13548491 ataagagaggattagaacacactataattgttatttattaattcaaatagttgtaaacataaga 13548554  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 31876990 - 31876899
Alignment:
Q  103 atcaataaaaagatatagtaagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataa 194  Q
    ||||||| ||| | ||||||| ||||||||||| ||||  |||||| | |||||||||||  ||||||||||  |||||| | |||||||||    
T  31876990 atcaatataaatagatagtaaaagaataagagatgatttaaacacaccgtaattgttattaattaatacaaatgattttaaagataagataa 31876899  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 18700614 - 18700663
Alignment:
Q  42 tatctaaat-aaaagtgataagttaaaaaagaaaatgttactttcgagta 90  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||| |||||    
T  18700614 tatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagta 18700663  T

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Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 40882066 - 40882454
Alignment:
Q  20 ctttctactgcgcaaacgcatatatctaaataaaagtgataagttaaaaaagaaaatgttactttcgagtagccagttattccatcaataaaaagatata 119  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  40882066 ctttctactgcgcaaacgcatatatctaaataaaagtgataggttaaaaaagaaaatgttactttcaagtagc-agttattccatcaataaaaagatata 40882164  T
Q  120 gtaagagaataagagaggattagaacacatcata--attgttattttttaatacaaacaattttagacataagataaaacatactcaccataaaatagaa 217  Q
     ||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40882165 ataaaagaataagagaggattagaacacatcatataattgttattttttaatacaaacaattttagacataagataaaacatactcaccataaaatagaa 40882264  T
Q  218 atataaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcactttacatttccgaaatggaataaagctagttatataatca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40882265 atataaataaaacataatctctttaacacattgtcatacaaaaaacaatatctttagcactttacatttccgaaatggaataaagctagttatataatca 40882364  T
Q  318 ctttatcgaagtgtgtttcaaaacatgtatatatacttacattttgagctttctcctagtaatgttttctgttctctacttcttatgtttcc 409  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40882365 ctttatcaaagtgtgtttcaaaacatg--tatatacttacattttgagctttctcctagtaatgttttctattctctacttcttatgtttcc 40882454  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 40802455 - 40802356
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaat-aaaagtgataagttaaaaaagaaaatgttactttcgagtagccagttattccatcaataaaaagatata 119  Q
    |||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||| |||||   ||||||| ||| |||||| |||||||    
T  40802455 tttctactgcgcaaacacatatatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagta-atagttatttcataaataaagagatata 40802357  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 500
Target Start/End: Original strand, 40882468 - 40882497
Alignment:
Q  471 cactaccattttccttgtctgcttcttctc 500  Q
    ||||||||||||||||||||||||||||||    
T  40882468 cactaccattttccttgtctgcttcttctc 40882497  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 6768504 - 6768653
Alignment:
Q  44 tctaaataaaagtgataagttaaaaaagaaaatgttactttcgagtagccagttattccatcaataaaaagatatagtaagagaataagagaggattaga 143  Q
    ||||||||||||||||| ||| |||||||||||||||||||| | | || ||| | |  |   ||| ||| | ||||||||||||||||| ||| |||||    
T  6768504 tctaaataaaagtgataggttcaaaaagaaaatgttactttcaaat-gctagtgaataaaaatatacaaatagatagtaagagaataagaaaggtttaga 6768602  T
Q  144 acacatcataattgttattttttaatacaaacaattttagacataagataa 194  Q
    || || | |||||| ||||| |||||||||| | ||||| |||||||||||    
T  6768603 acgcaccctaattgctatttattaatacaaatagttttaaacataagataa 6768653  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 26646077 - 26646020
Alignment:
Q  117 atagtaagagaataagagaggattagaacacatcataattgttattttttaatacaaa 174  Q
    ||||||||||||||| |||| ||||||||||| |||| ||||||||  ||||||||||    
T  26646077 atagtaagagaataaaagagaattagaacacaccatagttgttattaattaatacaaa 26646020  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 23126787 - 23126717
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaat-aaaagtgataagttaaaaaagaaaatgttactttcgagta 90  Q
    |||||||||||||||  ||| ||||||||| |||||||||| ||| ||||||||||||||||||| |||||    
T  23126787 tttctactgcgcaaatacatgtatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagta 23126717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 21349439 - 21349504
Alignment:
Q  20 ctttctactgcgcaaacgcatatatctaaataaaagtgataagttaaaaaagaaaatgttactttc 85  Q
    ||||||||||||| || |||  ||| |||||||||||||||  || ||||||||||||||||||||    
T  21349439 ctttctactgcgctaatgcacgtatttaaataaaagtgatagattcaaaaagaaaatgttactttc 21349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 27817165 - 27817124
Alignment:
Q  126 gaataagagaggattagaacacatcataattgttatttttta 167  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  27817165 gaataagagaggattagaacacaccgtaattgttatttttta 27817124  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 27815576 - 27815513
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaataaaagtgataagttaaaaaagaaaatgttacttt 84  Q
    |||||||||| ||||| ||| ||  || | |||||||||| |||||||||||||||||||||||    
T  27815576 tttctactgcacaaacacatgtaaatagacaaaagtgataggttaaaaaagaaaatgttacttt 27815513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 27815483 - 27815441
Alignment:
Q  125 agaataagagaggattagaacacatcataattgttatttttta 167  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  27815483 agaataagagaggattagaacaaaccgtaattgttatttttta 27815441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 29634564 - 29634494
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaataaaagtgataagttaaaaaagaaaatgttactttcgagtag 91  Q
    |||||||||||||||| || || |||| | |||||||||| |||  |||||||||| ||||||| ||||||    
T  29634564 tttctactgcgcaaacacacatttctatacaaaagtgataggttgtaaaagaaaattttactttagagtag 29634494  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 6079895 - 6079717
Alignment:
Q  21 tttctactgcgcaaacgcatatatctaaataaaagtgataagttaaaaaagaaaatgttactttcgagtagccagttattccatcaataaaaagatat-- 118  Q
    |||||||||||| |||||||||||||| | |||| ||||| |||| ||||||||||| |||||| || |||  || ||||| || |||||| ||||||      
T  6079895 tttctactgcgctaacgcatatatctacacaaaaatgataggttagaaaagaaaatgctacttttgaatag-tagctattctatgaataaagagatataa 6079797  T
Q  119 ------agtaagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataa 194  Q
          |||||| |||||  ||||||||||||||||  ||||||||||||| |||||  ||| | || || |||||||||||    
T  6079796 atagacagtaagtgaata--agaggattagaacacactataattgttatttattaattgaaatagttgtaaacataagataa 6079717  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 51030293 - 51030350
Alignment:
Q  117 atagtaagagaataagagaggattagaacacatcataattgttattttttaatacaaa 174  Q
    ||||||||||||||| |||| ||||||||||| |||| ||||||||  ||||||||||    
T  51030293 atagtaagagaataaaagagaattagaacacaccatagttgttattaattaatacaaa 51030350  T

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Target: scaffold0164 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 5111 - 5037
Alignment:
Q  120 gtaagagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataa 194  Q
    ||||| |||||||||||||||| ||||||  ||||||||||||| |||||  ||| | || || |||||||||||    
T  5111 gtaagtgaataagagaggattataacacactataattgttatttattaattgaaatagttgtaaacataagataa 5037  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 24864031 - 24864101
Alignment:
Q  124 gagaataagagaggattagaacacatcataattgttattttttaatacaaacaattttagacataagataa 194  Q
    |||||||||| | |||||||||||| | |  ||||||| | |||||||||| ||||||| |||||||||||    
T  24864031 gagaataagaaatgattagaacacaccgtcgttgttatatattaatacaaataattttaaacataagataa 24864101  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 38722 - 38763
Alignment:
Q  122 aagagaataagagaggattagaacacatcataattgttattt 163  Q
    ||||||||||||||||||||||||| |  |||||||||||||    
T  38722 aagagaataagagaggattagaacatactataattgttattt 38763  T

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