View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7936_low_7 (Length: 339)
Name: NF7936_low_7
Description: NF7936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7936_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 9380789 - 9380465
Alignment:
| Q |
18 |
gctagtacctacattaattgcatgacattttcgtatttaagtctataattcttggtgtaatggttagtcattatagagtnnnnnnnt-tcttggtgtaa- |
115 |
Q |
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| T |
9380789 |
gctagtacctacattaatagcatgacattttcgtatttaagtctataattcttggtgtaatggttagtcattatagagtaaaaaagtatagtagtccaac |
9380690 |
T |
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| Q |
116 |
--tgttctttaagaaaaaacatgttgatttgttatcaagtgggttgactttgacaaaatcacggtgagtcactatgtgtttattcaatccatcgtgatat |
213 |
Q |
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| T |
9380689 |
aatgttctttaagaaaaaacatgttgatttgttatcaagtgggttgactttgagaaaatcacgg-aagtcactatgtgtttattcaatccatcgtgatat |
9380591 |
T |
|
| Q |
214 |
taaatatgcac----nnnnnnnnntagttcatgtttggattatttaagtggatgtttgaattcatagtaaatctaatgaaatcatgaagtgataacataa |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
9380590 |
taaatatgcacacaaaaaaaaaaatagttcatgtttggattatttaagtggatgtttgaattgatagtaaatatgatgaaatcatgaagtgataacataa |
9380491 |
T |
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| Q |
310 |
ttttgacaaaatctatatttttgagt |
335 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9380490 |
ttttgacaaaatctatatttttgagt |
9380465 |
T |
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