View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7936_low_9 (Length: 214)
Name: NF7936_low_9
Description: NF7936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7936_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 3522765 - 3522914
Alignment:
| Q |
44 |
tagaaggaaaaatagtttggaagacattcattttgattgaattggtcgaacattaccaacactttccaccttgaggagacctcaaaagaggcttaaaaaa |
143 |
Q |
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| T |
3522765 |
tagaaggaaaaatagtttggaagacattcattttgattgaattgatccaacattaccaacactttccaccttgaggagacctcaaaaaaggcttaaaaaa |
3522864 |
T |
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| Q |
144 |
ttcacagttgaaaccattcgggcctgaacttttgtttcctttggaattat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522865 |
ttcacagttgaaaccattcgggcctgaacttttgtttcctttggaattat |
3522914 |
T |
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