View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7937_low_1 (Length: 396)
Name: NF7937_low_1
Description: NF7937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7937_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 30031751 - 30032123
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30031751 |
ttattctgaacggaagggatgttactatgttatggaacagtcaatttaatcacaggccgatttatacagtaaaagatcttcgcttgcgttgttttcacaa |
30031850 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30031851 |
tgagtctgaaatatttccatacagcttcctccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtgga |
30031950 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtggagacaattctgtga |
308 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30031951 |
agctttgacactggacattcggaaacaacaatgaagttgaaaaagctagtacttgttgaattacataaccttgagtttatatgtggagacaattctgata |
30032050 |
T |
|
| Q |
309 |
tgcagtttgctgttcaaaatcttgaactatttgaagtatttaaatgttccagactgaggcatatagttccatc |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||||||||||| |
|
|
| T |
30032051 |
tgcagtttgctgttcaaaatcttgaagtatttgaagtattcaaatgttccatactaaggaatatagttccatc |
30032123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 30225889 - 30226261
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30225889 |
ttattctgaacggaagggatgttactatgttatggaacagtcaatttaatcacaggccgatttatacagtaaaagatcttcgcttgcgttgttttcacaa |
30225988 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30225989 |
tgagtctgaaatatttccatacagcttcctccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtgga |
30226088 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtggagacaattctgtga |
308 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30226089 |
agctttgacactggacattcggaaacaacaatgaagttgaaaaagctagtacttgttgaattacataaccttgagtttatatgtggagacaattctgata |
30226188 |
T |
|
| Q |
309 |
tgcagtttgctgttcaaaatcttgaactatttgaagtatttaaatgttccagactgaggcatatagttccatc |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||||||||||| |
|
|
| T |
30226189 |
tgcagtttgctgttcaaaatcttgaagtatttgaagtattcaaatgttccatactaaggaatatagttccatc |
30226261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30092447 - 30092760
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30092447 |
ttattctgaacggaagggatgttactatgttatggaacagtcaatttaatcacaggccgatctatacagtaaaagatcttcgcttgcgttgttttcacaa |
30092546 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30092547 |
tgagtctgaaatatttccacacagcttcctccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtgga |
30092646 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtggagacaattctgtga |
308 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30092647 |
agctttgaccttggacattcggaaacaacaatgaagttgaaaaaattagtacttgttgaattacataaccttgagtttatatgtggagacaattctgata |
30092746 |
T |
|
| Q |
309 |
tgcagtttgctgtt |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30092747 |
tgcagtttgctgtt |
30092760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30114300 - 30114613
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30114300 |
ttattctgaacggaagggatgttactatgttatggaacagtcaatttaatcacaggccgatctatacagtaaaagatcttcgcttgcgttgttttcacaa |
30114399 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30114400 |
tgagtctgaaatatttccacacagcttcctccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtgga |
30114499 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtggagacaattctgtga |
308 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30114500 |
agctttgaccttggacattcggaaacaacaatgaagttgaaaaaattagtacttgttgaattacataaccttgagtttatatgtggagacaattctgata |
30114599 |
T |
|
| Q |
309 |
tgcagtttgctgtt |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30114600 |
tgcagtttgctgtt |
30114613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 30129052 - 30129365
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30129052 |
ttattctgaacggaagggatgttactatgttatggaacagtcaatttaatcacaggccgatctatacagtaaaagatcttcgcttgcgttgttttcacaa |
30129151 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30129152 |
tgagtctgaaatatttccacacagcttcctccaaagatttatcaatcttgaaaaacttatggtgacttgcagttccttcacagaaattttctcaagtgga |
30129251 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtggagacaattctgtga |
308 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30129252 |
agctttgaccttggacattcggaaacaacaatgaagttgaaaaaattagtacttgttgaattacataaccttgagtttatatgtggagacaattctgata |
30129351 |
T |
|
| Q |
309 |
tgcagtttgctgtt |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30129352 |
tgcagtttgctgtt |
30129365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 312
Target Start/End: Original strand, 30176793 - 30176968
Alignment:
| Q |
137 |
ctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtggaagctttgacactggacattctgaaacaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||| ||||| ||||| || |||||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
30176793 |
ctccaaagatttatcaatcttgaaaatcttaaagtgtcttgtagttctttcactgagattttctcaagtggaagctttggcactgaacattctgaaagaa |
30176892 |
T |
|
| Q |
237 |
caatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtggagacaattctgtgatgca |
312 |
Q |
| |
|
|||||||||| | | ||||| |||||||| || ||||||| ||||||||||||| ||| || |||| |||||| |
|
|
| T |
30176893 |
agatgaagttgagaaaactagtaattgttgaactaaataacctcgagtttatatgtgaagagaaatctgagatgca |
30176968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 30024771 - 30025055
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||| ||||| ||||| | || ||||||| ||||| | ||||||| |||| ||||| || | |
|
|
| T |
30024771 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30024870 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
|||| |||||| |||||||| | || ||||||| ||||||||||| ||| |||| | |||| || |||||||||||| | |||||||| |||||| |
|
|
| T |
30024871 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcgagtgga |
30024970 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||| | | |||||||||||| | ||| ||||||| ||||||||||||| |
|
|
| T |
30024971 |
agcaaatgcgctggacattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctcgagtttatatgtg |
30025055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 30117351 - 30117067
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||| ||||| ||||| | || ||||||| ||||| | ||||||| |||| ||||| || | |
|
|
| T |
30117351 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30117252 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
|||| |||||| |||||||| | || ||||||| ||||||||||| ||| |||| | |||| || |||||||||||| | |||||||| |||||| |
|
|
| T |
30117251 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcgagtgga |
30117152 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||| | | |||||||||||| | ||| ||||||| ||||||||||||| |
|
|
| T |
30117151 |
agcaaatgcgctggacattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctcgagtttatatgtg |
30117067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 30132108 - 30131824
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||| ||||| ||||| | || ||||||| ||||| | ||||||| |||| ||||| || | |
|
|
| T |
30132108 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30132009 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
|||| |||||| |||||||| | || ||||||| ||||||||||| ||| |||| | |||| || |||||||||||| | |||||||| |||||| |
|
|
| T |
30132008 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataaagcttaaggtgacatgtagttccttcacatacattttctcgagtgga |
30131909 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||| | | |||||||||||| | ||| ||||||| ||||||||||||| |
|
|
| T |
30131908 |
agcaaatgcgctggacattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctcgagtttatatgtg |
30131824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 30237357 - 30237073
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||| ||||| ||||| | || ||||||| ||||| | ||||||| |||| ||||| || | |
|
|
| T |
30237357 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatgatgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30237258 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
|||| |||||| |||||||| | || ||||||| ||||||||||| | | ||||| |||| || |||||||||||| | |||||||| |||||| |
|
|
| T |
30237257 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcatagagcttattgtgacatgtagttccttcacatacattttctcgagtgga |
30237158 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||| | | |||||||||||| | ||| ||||||| |||||||||||| |
|
|
| T |
30237157 |
agcgaatgcgctggacattctgaaacaactatgaagttgagaaatttagtacttgttcagttagataacctctagtttatatgtg |
30237073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 30035926 - 30035642
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||| ||||| ||||| || ||||||| ||||| | ||||||| |||| ||||| || | |
|
|
| T |
30035926 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatggtgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30035827 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
|||| |||||| |||||||| | || ||||||| ||||||||||| || |||| | |||| || |||||||||||| | |||||||| |||||| |
|
|
| T |
30035826 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataatgcttaaggtgacatgtagttccttcacatacattttctcgagtgga |
30035727 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||| | |||||||||||| | ||| ||||||| ||||||||||||| |
|
|
| T |
30035726 |
agcgaatgcgctggacattctgaaacaactatgaagttgagaattttagtacttgttcagttagataacctcgagtttatatgtg |
30035642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 30230064 - 30229780
Alignment:
| Q |
9 |
ttattctgaacagaagggatgttactttgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaa |
108 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||| ||||| ||||| || ||||||| ||||| | ||||||| |||| ||||| || | |
|
|
| T |
30230064 |
ttattctgaacagaaaggatgtcaccatgttatgcaatggtcaacttaatggtgagcttatctacagagtaacagctcttcgcctgcgatgtttccatga |
30229965 |
T |
|
| Q |
109 |
tgagtctgacatatttccatacagctttctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtgga |
208 |
Q |
| |
|
|||| |||||| |||||||| | || ||||||| ||||||||||| || |||| | |||| || |||||||||||| | |||||||| |||||| |
|
|
| T |
30229964 |
tgaggctgacaaatttccatctggtttcctccaaaagtttatcaatctcataatgcttaaggtgacatgtagttccttcacatacattttctcgagtgga |
30229865 |
T |
|
| Q |
209 |
agctttgacactggacattctgaaacaacaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||| | ||||||||||||||||||| |||||||||| | |||||||||||| | ||| ||||||| ||||||||||||| |
|
|
| T |
30229864 |
agcgaatgcgctggacattctgaaacaactatgaagttgagaattttagtacttgttcagttagataacctcgagtttatatgtg |
30229780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 30070022 - 30070175
Alignment:
| Q |
140 |
caaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtggaagctttgacactggacattctgaaacaacaa |
239 |
Q |
| |
|
||||| ||||||||||| ||||| |||| | |||| || ||||||||| |||| |||||||| ||||||||| || ||||||||||| | |||||| | |
|
|
| T |
30070022 |
caaaggtttatcaatctcgaaaaccttaagttgacatgtagttccttctcagagattttctcgagtggaagcgtttgcactggacattataaaacaagta |
30070121 |
T |
|
| Q |
240 |
tgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgtg |
293 |
Q |
| |
|
||||||||| | |||||||| | | ||||| ||||||||||||||||||| |
|
|
| T |
30070122 |
tgaagttgagaagtttagtactcagtaacttacacaaccttgagtttatatgtg |
30070175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 292
Target Start/End: Original strand, 30792436 - 30792692
Alignment:
| Q |
36 |
tgttatgcaacagtcaatttaatcacaggccgatctacacagtaaaatatcttcgcttgcgttgttttcacaatgagtctgacatatttccatacagctt |
135 |
Q |
| |
|
||||||||||| ||||| ||||| | || |||||||||||||||| ||||||| | || |||||||| | | |||| | |||||||| | || |
|
|
| T |
30792436 |
tgttatgcaacggtcaacttaatgatgagctgatctacacagtaaaagctcttcgcctacgatgttttcatgacacgactgaaaaatttccatctggttt |
30792535 |
T |
|
| Q |
136 |
tctccaaagatttatcaatcttgaaaaacttatgctgacttgcagttccttcacagaaattttctcaagtggaagctttgacactggacattctgaaaca |
235 |
Q |
| |
|
||||||||||||||| | || ||| | |||| | || | || ||||||||| |||| ||||||| ||||||||| || ||||| ||||||||||||| |
|
|
| T |
30792536 |
cctccaaagatttatccacctggaatatcttaaggtgtcatgtagttccttctcagagattttcttgagtggaagcatttgcactgaacattctgaaaca |
30792635 |
T |
|
| Q |
236 |
acaatgaagttgacagagttagtacttgttgaattacataaccttgagtttatatgt |
292 |
Q |
| |
|
|| |||||||||| | ||||||||| || |||| | |||||||||||||||||| |
|
|
| T |
30792636 |
actatgaagttgagaagactagtacttgctggattaaaaaaccttgagtttatatgt |
30792692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 30104792 - 30104844
Alignment:
| Q |
297 |
acaattctgtgatgcagtttgctgttcaaaatcttgaactatttgaagtattt |
349 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30104792 |
acaattctgatatgcagtttgctgttcaaaatcttgaagtatttgaagtattt |
30104844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 30253851 - 30253982
Alignment:
| Q |
68 |
atctacacagtaaaatatcttcgcttgcgttgttttcacaatgagtctgacatatttccatacagcttt-ctccaaagatttatcaatcttgaaaaactt |
166 |
Q |
| |
|
|||||||| |||||| ||||||| | || |||||||| ||||||||||||| |||||||| ||| ||| |||||||| ||||||||||| |||| ||| |
|
|
| T |
30253851 |
atctacacggtaaaagctcttcgcctacgatgttttcataatgagtctgacaaatttccat-caggtttcctccaaaggtttatcaatctcaaaaacctt |
30253949 |
T |
|
| Q |
167 |
atgctgacttgcagttccttcacagaaattttc |
199 |
Q |
| |
|
| | | ||||| |||||||||||| | |||||| |
|
|
| T |
30253950 |
aagataacttgtagttccttcacaaagattttc |
30253982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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