View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7937_low_2 (Length: 359)
Name: NF7937_low_2
Description: NF7937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7937_low_2 |
 | |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 51167330 - 51167634
Alignment:
| Q |
1 |
tttaaatatttggtcattctaagagtaatttaactcccaatcatgtcgtcatagaaatcaatggataataaagagatgaagagtaaaacattgtgaaaaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51167330 |
tttaaatatttggtcattttaagagtaatttaactcccaatcatgtc---atagaaatcaatggataataaagagatgaagagtaaaacattgtgaaaaa |
51167426 |
T |
|
| Q |
101 |
acaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattgacatatttatacaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
51167427 |
acaataatagaaaattgaagaggaacaattcaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattcacgaatttatacaca |
51167526 |
T |
|
| Q |
201 |
caatgctttttcaatatagaacaaatagtctcattagtataaactaaattgatattgagatcatgttattaatggttgtatttaacactgtttattttaa |
300 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
51167527 |
caatgctttttcaatgtaggacaaatagtctccttagtagaaactaaat--atattgagatcatgttattagtggttgtatttaaaactgtttattttaa |
51167624 |
T |
|
| Q |
301 |
gcattttatt |
310 |
Q |
| |
|
|||||||| |
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|
| T |
51167625 |
atattttatt |
51167634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 32743455 - 32743741
Alignment:
| Q |
1 |
tttaaatatttggtcattctaagagtaatttaactcccaatcatgtcgtcatagaaatcaatggataataaagagatgaagagtaaaacattgtgaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32743455 |
tttaaatatttggtcattctaagagtaatttaactcccaatcatgtc---atagaaatcaatggataataaagagatgaagagtaaaacattgtgaaaaa |
32743551 |
T |
|
| Q |
101 |
acaataatagaaaattgaagaggaacaatcca----atagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattgacatatttata |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
32743552 |
acaataatagaaaattgaagaggaacaatccaatatatagttgcttggaagtggtgatgaacaaaatccaaaaattgctgcacaaattgacata------ |
32743645 |
T |
|
| Q |
197 |
cacacaatgctttttcaatatagaacaaatagtctcattagtataaactaa----attgatattgagatcatgttattaatggttgtatttaacactgtt |
292 |
Q |
| |
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|| |||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32743646 |
--------gcattttcaatataggacaaatagtttcattagtagaaactaaatatattgatattgagatcatgttattagtggttgtatttaacactgtt |
32743737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 653324 - 653469
Alignment:
| Q |
97 |
aaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattgacatatttata |
196 |
Q |
| |
|
||||||||||||| ||||| ||||| | | ||||||| ||||||| |||| ||||||||||||| ||||| |||| |||| ||| | ||||||||||| |
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|
| T |
653324 |
aaaaacaataatacaaaatcgaagatgttccatccaattattgcttgaaagttgtgatgaacaaaacccaaactttggtgcaaaaaataacatatttata |
653423 |
T |
|
| Q |
197 |
cacacaatgctttttcaatatagaacaaatagtctcattagtataaac |
244 |
Q |
| |
|
| |||| | |||||||||||| |||||||||||||| |||| |||| |
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|
| T |
653424 |
tatacaa--ccttttcaatataggacaaatagtctcatcagtagaaac |
653469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 245
Target Start/End: Original strand, 40072075 - 40072254
Alignment:
| Q |
65 |
ataataaagagatgaagagtaaaacattgtgaaaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatc |
164 |
Q |
| |
|
||||||||||| |||||||||||| ||| || || | ||||| ||||||||||| ||| ||||||| ||||||| ||| | ||| ||||||| | |
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|
| T |
40072075 |
ataataaagagttgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaattatccaattattgcttgaaagggatgaacaacaaaacc |
40072174 |
T |
|
| Q |
165 |
caaaatttgctgcacaaattgacatatttatacacacaatgctttttcaatatagaacaaatagtctcattagtataaact |
245 |
Q |
| |
|
||||||||| || | || ||||| ||||||||||||| |||||||||| ||| ||||||||||| ||||||| ||||| |
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|
| T |
40072175 |
caaaatttggtgaaagaaactacatacttatacacacaat-ctttttcaatgtaggacaaatagtctaattagtagaaact |
40072254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 32743736 - 32743772
Alignment:
| Q |
305 |
tttattgtcaatatatgttcgtatgcatagactaatt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32743736 |
tttattgtcaatatatgttcgtatgcatagactaatt |
32743772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 43942919 - 43942809
Alignment:
| Q |
95 |
gaaaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattgacatattta |
194 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| | ||||| |||||||| | |||||||||||||||| |||||||||| |||||||| | ||||||||| |
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|
| T |
43942919 |
gaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaatcacatattta |
43942820 |
T |
|
| Q |
195 |
tacacacaatg |
205 |
Q |
| |
|
||||||||||| |
|
|
| T |
43942819 |
tacacacaatg |
43942809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 22074036 - 22073965
Alignment:
| Q |
111 |
aaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaa |
182 |
Q |
| |
|
||||||||||| ||| || |||| |||| ||| |||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
22074036 |
aaaattgaagatgaattatacaattgttgtttgaaagtggtgatgaacaaaacccaaaatttggtgcgcaaa |
22073965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 5885018 - 5885128
Alignment:
| Q |
95 |
gaaaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattgacatattta |
194 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| | ||||| |||||||| | |||||||||||||||| |||||||||| |||||||| | ||||||||| |
|
|
| T |
5885018 |
gaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaatcacatattta |
5885117 |
T |
|
| Q |
195 |
tacacacaatg |
205 |
Q |
| |
|
||||||||||| |
|
|
| T |
5885118 |
tacacacaatg |
5885128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 10764 - 10874
Alignment:
| Q |
95 |
gaaaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattgacatattta |
194 |
Q |
| |
|
||||||||| ||| | || |||||||| |||| | ||||| |||||||| | |||||||||||||||| |||||||||| |||||||| | ||||||||| |
|
|
| T |
10764 |
gaaaaaacagtaagacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaatcacatattta |
10863 |
T |
|
| Q |
195 |
tacacacaatg |
205 |
Q |
| |
|
|| |||||||| |
|
|
| T |
10864 |
tatacacaatg |
10874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 26615867 - 26616002
Alignment:
| Q |
48 |
gtcatagaaatcaatggataataaagagatgaagagtaaaacattgtgaaaa-aacaataatagaaaattgaagaggaacaatccaatagttgcttggaa |
146 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||| ||| ||||||| |||||||||| ||||||||||| || | | ||||| ||| ||| | |
|
|
| T |
26615867 |
gtcatagaaaccaattaataatcaagagatgaagagttaaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaat |
26615966 |
T |
|
| Q |
147 |
gtggtgatgaacaaaatccaaaatttgctgcacaaa |
182 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| |||| |
|
|
| T |
26615967 |
gtggtgacgaacaaaacccaaaatttggtgcccaaa |
26616002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 26721795 - 26721930
Alignment:
| Q |
48 |
gtcatagaaatcaatggataataaagagatgaagagtaaaacattgtgaaaa-aacaataatagaaaattgaagaggaacaatccaatagttgcttggaa |
146 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||||||| ||| ||||||| |||||||||| ||||||||||| || | | ||||| ||| ||| | |
|
|
| T |
26721795 |
gtcatagaaaccaattaataatcaagagatgaagagttaaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaat |
26721894 |
T |
|
| Q |
147 |
gtggtgatgaacaaaatccaaaatttgctgcacaaa |
182 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| |||| |
|
|
| T |
26721895 |
gtggtgacgaacaaaacccaaaatttggtgcccaaa |
26721930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 16856693 - 16856606
Alignment:
| Q |
95 |
gaaaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaa |
182 |
Q |
| |
|
||||||| | ||||| || |||||||| |||| | ||||| |||||||| | | |||||||||||||| |||||||||| ||| |||| |
|
|
| T |
16856693 |
gaaaaaaaagtaatacaatattgaagatgaactaaccaattgttgcttgaatgcggtgatgaacaaaacccaaaatttggtgcccaaa |
16856606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 16856610 - 16856569
Alignment:
| Q |
164 |
ccaaaatttgctgcacaaattgacatatttatacacacaatg |
205 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
16856610 |
ccaaaatttggtgcacaaaatcacatatttatacacacaatg |
16856569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 27280853 - 27280918
Alignment:
| Q |
97 |
aaaaacaataatagaaaattgaagaggaacaatccaatagttgcttggaagtggtgatgaacaaaa |
162 |
Q |
| |
|
||||||| |||| ||||||||||| |||| ||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
27280853 |
aaaaacatcaatataaaattgaagatgaactatccaattattgcttgaaagtggtgatggacaaaa |
27280918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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