View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7937_low_3 (Length: 321)
Name: NF7937_low_3
Description: NF7937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7937_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 88 - 305
Target Start/End: Complemental strand, 3293349 - 3293134
Alignment:
| Q |
88 |
ggtttaagcattcttatcaaagtatattctattgacatcgacaaaataatacagggaaagtcaaaagtgtatcagtatcttatagattccatctttgtca |
187 |
Q |
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| T |
3293349 |
ggtttaagcattcttatcaaagtat--tctattgacatcgacaaaataatacagggaaagtcaaaagtgtatcagtatcttatagattccatctttgtca |
3293252 |
T |
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| Q |
188 |
cttagaataatttggtaaatcagtagaagattaggactttcattcgagcgtaaatgctacttcgagatacttgtaatcaaacacttcaaatgttctcaga |
287 |
Q |
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| T |
3293251 |
cttagaataatatggtaaatcagtagaagattaggacttccattcgagcgtaaatgctacttcgagatacttgtaatcaaacacttcaaatgttctcaga |
3293152 |
T |
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| Q |
288 |
gctttcgcgggatgattt |
305 |
Q |
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|||||||||||||||||| |
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| T |
3293151 |
gctttcgcgggatgattt |
3293134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 3304958 - 3304804
Alignment:
| Q |
149 |
caaaagtgtatcagtatcttatagattccatctttgtcacttagaataatttggtaaatcagtagaagattaggactttcattcgagcgtaaatgctact |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || ||| ||||||||||||||||||| |||||| ||||||| |
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| T |
3304958 |
caaaagtgtatcagtatcttatagattccatctttgtcact--gaataattttgtaactcggtaaaagattaggactttcattcaagcgtagatgctacg |
3304861 |
T |
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| Q |
249 |
tcgagatacttgtaatcaaacacttcaaatgttctcagagctttcgcgggatgattt |
305 |
Q |
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| T |
3304860 |
tcgagatacttgtaatcaaacacttcaaatattctcagagctttcgcgggatgattt |
3304804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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