View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7937_low_5 (Length: 211)
Name: NF7937_low_5
Description: NF7937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7937_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 11431515 - 11431692
Alignment:
| Q |
14 |
tttggagttggaataggaacttcaacatactgcttaaaccaaaccaacaatattgaattgaattagagagtgactcatgtaaatgtaaatggaattatag |
113 |
Q |
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| T |
11431515 |
tttggagttggaatatgaacttcaacatgctgcttaaaacaaaccaacaatattgaattgaattagag--tgactcatgcaaatgtaaatggaattatag |
11431612 |
T |
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| Q |
114 |
tactttctatgttttggaatcatgcaaatgtatgcttttactttccatattgcaaatacatactagtataagtcccttaa |
193 |
Q |
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| T |
11431613 |
tactttctatgttttggaatcatgcaaatgtatgcttttactttccatattgcaaatacatactagtataagtcccttaa |
11431692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 11563951 - 11563829
Alignment:
| Q |
14 |
tttggagttggaataggaacttcaacatactgcttaaaccaaaccaacaatattgaattgaattagagagtgactcatgtaaatgtaaatggaattatag |
113 |
Q |
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| T |
11563951 |
tttggagttggaatatgaacttcaacatgctgcttaaaacaaaccaacaatattgaattgaatt--agagtgactcatgcaaatgtaaatggaattatag |
11563854 |
T |
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| Q |
114 |
tactttctatgttttggaatcatgc |
138 |
Q |
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| T |
11563853 |
tactttctatgttttggaatcatgc |
11563829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 11802894 - 11802935
Alignment:
| Q |
14 |
tttggagttggaataggaacttcaacatactgcttaaaccaa |
55 |
Q |
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| T |
11802894 |
tttggagttggaataggaacttcaacatgctgcttaaaccaa |
11802935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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