View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7938_high_2 (Length: 372)
Name: NF7938_high_2
Description: NF7938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7938_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 39030626 - 39030981
Alignment:
| Q |
1 |
aactcttgttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39030626 |
aactcttgttgaggcctttcaacctttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa |
39030725 |
T |
|
| Q |
101 |
gccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39030726 |
gccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatg |
39030825 |
T |
|
| Q |
201 |
agatgaggaggaagtcaaaagaagaaggacttggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39030826 |
agatgaggaggaagtcaaaagaagaaggacttggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagac |
39030925 |
T |
|
| Q |
301 |
tgttgtgctccatagtgtggccacctaaatcctcacattttaccaaggcaacaagt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39030926 |
tgttgtgctccatagtgtggccacctaaatcctcacattttaccaaggcaacaagt |
39030981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 354
Target Start/End: Complemental strand, 37862955 - 37862604
Alignment:
| Q |
3 |
ctcttgttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagc |
102 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||||||||||| || |||||||| || |||||||| |||| |||||||||||||||||||||| |
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|
| T |
37862955 |
ctcttgttgaggcatttcagcctttgaatatctcggattacaattccatcttttggatcgcgcacccaggtggaccagcaattcttgaccaagttgaact |
37862856 |
T |
|
| Q |
103 |
caaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| | | ||| ||||||| ||||||||| |
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|
| T |
37862855 |
caaattaggcttaaagccagagaaaatgcaagccactcgacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgag |
37862756 |
T |
|
| Q |
203 |
atgaggaggaagtcaaaagaagaaggacttggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactg |
302 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||| |||||| || || ||||| |||||||| |||||||| ||||||| || |||||||| ||||||||| |
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|
| T |
37862755 |
atgaggatgaaatcaaaagaagacggacttgccacaaccggcgagggactcgaatggggtgtgcttttcggttttggtcccggactcacaatcgagactg |
37862656 |
T |
|
| Q |
303 |
ttgtgctccatagtgtggccacctaaatcctcacattttaccaaggcaacaa |
354 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| |||| ||| |||||| |
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|
| T |
37862655 |
ttgtgctccgtagtgtgtccacctaaatcctcacatcttactaagtcaacaa |
37862604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 37858929 - 37858602
Alignment:
| Q |
3 |
ctcttgttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagc |
102 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||| ||||||||||| || |||||||| |||||||| || |||| ||||||||| |||||||| ||||| |
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|
| T |
37858929 |
ctcttgctgaggcctttcaacctttaggtatctctgattacaattccatcttttggatcgcacaccctggtggaccagcaattctggaccaagtggaagc |
37858830 |
T |
|
| Q |
103 |
caaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgag |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||| |
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|
| T |
37858829 |
caaattaagcttaaagccagagaaaatgcaagccactcgacatgtgcttagcgagtatggtaacatgtcaagtgcatgtgtgttattcatcttggatgag |
37858730 |
T |
|
| Q |
203 |
atgaggaggaagtcaaaagaagaaggacttggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactg |
302 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||| || || || |||||||| || || || |||| || || ||||||||||| ||||||| |
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|
| T |
37858729 |
atgaggaggaagtcaaaagaagacggacttgccacaacaggcgaggggctggaatggggtgtcctatttggtttcgggcccggactcactgttgagactg |
37858630 |
T |
|
| Q |
303 |
ttgtgctccatagtgtggccacctaaat |
330 |
Q |
| |
|
| |||||||| ||||| ||||| ||||| |
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|
| T |
37858629 |
tagtgctccacagtgttgccacttaaat |
37858602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 1478585 - 1478760
Alignment:
| Q |
32 |
atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgc |
131 |
Q |
| |
|
||||| ||||| |||||||| || |||||||| |||||||| |||| |||||||| ||||||||||||| || ||||||||||| || || |||||| |
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|
| T |
1478585 |
atctctgattataattcaatcttctggattgctcacccaggtggacccgcaattctagaccaagttgaagaaaagttaggcttaaaacctgaaaaaatga |
1478684 |
T |
|
| Q |
132 |
aagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgag |
207 |
Q |
| |
|
| |||||| || | ||||||||||| ||||||||||||||||| ||| || || ||||| |||||||||||||| |
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|
| T |
1478685 |
aggccactagggaagtacttagtgaatatggtaacatgtcaagcgcatgtgtattgttcatcttggatgagatgag |
1478760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 1482785 - 1482922
Alignment:
| Q |
38 |
gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagcca |
137 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||| |||| ||||||||||| ||||||||| || ||||||||||| || || || ||| |||||| |
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|
| T |
1482785 |
gattacaactcaatcttttggattgctcatccaggtggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaacctgaaaagatgaaagcca |
1482884 |
T |
|
| Q |
138 |
ctcggcatgtacttagtgagtatggtaacatgtcaagt |
175 |
Q |
| |
|
|| | | ||||||||||| |||||||||||||||||| |
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|
| T |
1482885 |
ctagagaagtacttagtgaatatggtaacatgtcaagt |
1482922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 316
Target Start/End: Original strand, 1487256 - 1487540
Alignment:
| Q |
32 |
atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgc |
131 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| ||||||||||||| |||||| | ||||| |||||| || |||| || || || || || ||| |
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|
| T |
1487256 |
atctctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaacaaaagttagctttgaaaccggaaaagatga |
1487355 |
T |
|
| Q |
132 |
aagccactcggcatgtacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaagtcaaaagaagaaggact |
231 |
Q |
| |
|
| |||||| || | ||||||||||| |||||||||||||||||| | | || || || || |||||||| ||||| | || ||| |||| ||||| |
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|
| T |
1487356 |
aggccactagggaagtacttagtgaatatggtaacatgtcaagtgcttgtgtattgtttatattggatgaaatgagaaagagatcagctcaagagggact |
1487455 |
T |
|
| Q |
232 |
tggcacaacaggagaaggacttgaatggggcgtgcttttaagttttggacctggactcactgtcgagactgttgtgctccatagt |
316 |
Q |
| |
|
|| || ||||||||||||||| ||||||| ||| | || | |||||||||||||| || | || |||||||| ||||||||| |
|
|
| T |
1487456 |
tgagaccacaggagaaggacttaaatggggagtgttgttcggctttggacctggacttaccattgaaactgttgttctccatagt |
1487540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 1509686 - 1509776
Alignment:
| Q |
9 |
ttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga |
99 |
Q |
| |
|
||||||| |||||| | || || ||||| |||||||| ||||| ||||||||||| ||||||| ||| |||||| ||||||||||||| |
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|
| T |
1509686 |
ttgaggcatttcaaccattaaacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttga |
1509776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 1492754 - 1492818
Alignment:
| Q |
32 |
atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagt |
96 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||| || |||| |||||| | |||||||| |
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|
| T |
1492754 |
atctctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagt |
1492818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 35251412 - 35251587
Alignment:
| Q |
47 |
tcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagccactcggcatg |
146 |
Q |
| |
|
||||| ||||||||||| ||| | || |||| ||| ||||||||||||||||| | ||| |||||||| ||||| || ||| || |||||||||| ||| |
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|
| T |
35251412 |
tcaatcttttggattgctcacacgggtggaccagcgattcttgaccaagttgaggacaagttaggcttgaagcctgaaaaattggaagccactcgaaatg |
35251511 |
T |
|
| Q |
147 |
tacttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgaggaggaagtcaaaaga |
222 |
Q |
| |
|
| | ||| ||||| |||||||||||| | | ||||| |||||||| ||||| ||||| | |||||| ||||| |
|
|
| T |
35251512 |
tgttgagtagttatgggaacatgtcaagtgcttgtgtgttgttcattttagatgaaatgagaaagaagtccaaaga |
35251587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 44129166 - 44129227
Alignment:
| Q |
38 |
gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||| |||||||| || |||||||| |
|
|
| T |
44129166 |
gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga |
44129227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 44133371 - 44133432
Alignment:
| Q |
38 |
gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||| |||||||| || |||||||| |
|
|
| T |
44133371 |
gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga |
44133432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 44141793 - 44141854
Alignment:
| Q |
38 |
gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||| |||||||| || |||||||| |
|
|
| T |
44141793 |
gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga |
44141854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 24163209 - 24163151
Alignment:
| Q |
149 |
cttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgag |
207 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| || |||||||| || ||||||||||| |
|
|
| T |
24163209 |
cttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgag |
24163151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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