View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7938_low_1 (Length: 400)
Name: NF7938_low_1
Description: NF7938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7938_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 38312210 - 38311847
Alignment:
| Q |
18 |
cttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaattgttttctcaag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312210 |
cttcttacagttttaggtcctgaacaagttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaatggaattgttttctcaag |
38312111 |
T |
|
| Q |
118 |
aaatatatagtgtgtgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctga |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312110 |
aaatatatagtgtgcgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaattgattatatatgttgacaacatcgtcaaattgatctga |
38312011 |
T |
|
| Q |
218 |
atgacaaattggtggactccctgatccggctaatgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatggcgacacatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312010 |
atgacaaattggtggactccctgatccggctaatgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatggcgacacatcc |
38311911 |
T |
|
| Q |
318 |
tgttgcatatgcaaaacaaacaatattaataaagataatgcccatcgttaactgaggatatgtg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38311910 |
tgttgcatatgcaaaacaaacaatattaataaagataatgcccattgttaactgaggatatgtg |
38311847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 38268408 - 38268316
Alignment:
| Q |
18 |
cttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaattgttt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| | |||||||| | ||| || ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38268408 |
cttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaattgttt |
38268316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 327
Target Start/End: Complemental strand, 38268246 - 38268072
Alignment:
| Q |
150 |
taatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctgaatgacaaattggtggactccctgatccggcta |
249 |
Q |
| |
|
||||||||||| || |||| ||||||||| | ||| || | ||||||||||||||||||| |||||||||| |||| |||||| ||| ||| | || |
|
|
| T |
38268246 |
taatagagttgttcatagcgtagtaaaaatttattgtaaaccttgacaacatcgtcaaattcatctgaatgagaaat---tggactgtctgttccagtta |
38268150 |
T |
|
| Q |
250 |
atgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatggcgacacatcctgttgcatat |
327 |
Q |
| |
|
||| || ||| ||||||||| ||||||||| |||||| |||| |||||||||| || ||||| ||||||| ||||| |
|
|
| T |
38268149 |
atgaactgccaccattcaaaggttcgctgctgtgagataatctacctgatgttaacggagacacttcctgttacatat |
38268072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University