View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7939_high_1 (Length: 866)

Name: NF7939_high_1
Description: NF7939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7939_high_1
NF7939_high_1
[»] chr5 (1 HSPs)
chr5 (15-847)||(9973008-9973832)


Alignment Details
Target: chr5 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 15 - 847
Target Start/End: Complemental strand, 9973832 - 9973008
Alignment:
Q  15 aatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagcattataagaattcaagataagataattgagtagtgcacaccaagaagta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9973832 aatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagtattataagaattcaagataagataattgagtagagcacaccaagaagta 9973733  T
Q  115 tggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatctcagtatgatacattacttctag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973732 tggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatctcagtatgatacattacttctag 9973633  T
Q  215 tagatgttccaacatatatgatttcatcggcaactgcaaagactaatctttcgtgtcaaataggacaacaagggtagcaaagttcttcccctagagttgg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973632 tagatgttccaacatatatgatttcatcggcaactgcaaagactaatctttcgtgtcaaataggacaacaagggtagcaaagttcttcccctagagttgg 9973533  T
Q  315 acattgttgcattcacaagaattggatttgaacagaaaccactagctaagctcaaaaatatttagaccatctcatccaaacattttgagttttctgaacc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973532 acattgttgcattcacaagaattggatttgaacagaaaccactagctaagctcaaaaatatttagaccatctcatccaaacattttgagttttctgaacc 9973433  T
Q  415 atatttctacaaacttaatgaaagactataatgacaaatttaagaagaaaacaaaacttctgcaaactactcctgtgtatacatacaataaaatgtcttg 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9973432 atatttctacaaacttaatgaaagactataatgacaaatttaagaagaaaacaaaacttctgcaaactactcctgtgtatacatacaataaaatgtcttg 9973333  T
Q  515 taatcatacacagccaacaaaaaactgtgactgcagaatatttctctaaatctagccagacccttcttctaagtcggttgcaacttcaccactggttggc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9973332 taatcatacacagccaacaaaaaactgtgactgcagaatatttctctaaatctagccagacccttcttccaagtcggttgcaacttcaccactggttggc 9973233  T
Q  615 ctgcaagaattcaaaatatttaaataaaatcagggttggagggagtacttcagtttaattacattggtaattaatcattacattggttttga-nnnnnnn 713  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||            
T  9973232 ctgcaagatttcaaaatatttaaataaaatcagggtcggagggagtacttcagtttaattacattggtaattaatcaatacattggttttgatttttttt 9973133  T
Q  714 ngctcttataataaaggtcggagagggaggagggagtacttcagtttaatttagcacaacatttcccatgtgaatcctttaggcgtgtaacataaatgca 813  Q
      |||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9973132 ttctcttataataaaggtc---------ggaggtagtacttcagtttaatttagcacaacatttcccatgtgaatcctttaggtgtgtaacataaatgca 9973042  T
Q  814 ggccacaaaatgcttaaatttcattttttacagt 847  Q
    |||||||||||||||| |||||||||||||||||    
T  9973041 ggccacaaaatgcttagatttcattttttacagt 9973008  T

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