View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7939_high_2 (Length: 479)

Name: NF7939_high_2
Description: NF7939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7939_high_2
NF7939_high_2
[»] chr2 (3 HSPs)
chr2 (5-463)||(16601211-16601668)
chr2 (5-62)||(14465495-14465552)
chr2 (78-266)||(16605055-16605243)
[»] chr3 (1 HSPs)
chr3 (5-62)||(13224983-13225040)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-62)||(188416-188473)
[»] chr8 (3 HSPs)
chr8 (5-62)||(15006488-15006545)
chr8 (408-446)||(7622663-7622701)
chr8 (200-265)||(3426053-3426118)
[»] chr4 (1 HSPs)
chr4 (334-450)||(16207931-16208047)
[»] chr5 (1 HSPs)
chr5 (66-132)||(34980537-34980603)
[»] chr1 (2 HSPs)
chr1 (320-419)||(45710634-45710732)
chr1 (5-50)||(593263-593308)
[»] chr7 (1 HSPs)
chr7 (75-111)||(31795141-31795177)


Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 463
Target Start/End: Complemental strand, 16601668 - 16601211
Alignment:
Q  5 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggtatagccttgtgaactacaagacttgccaagcaaaaaagtaaag 104  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16601668 ctcagtcccaatgtggctgatcatcctctcagaccagctactgatcaccgccttggtatagccttgtgaactacaagacttgccaagcaaaaaagtaaag 16601569  T
Q  105 aagtgaagaaactgccttgcttgtcttgcaatttgcgaaataagatttcttgtcttgttttttaagaaacaaccttgcatcccatatgtcttaacgagca 204  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16601568 aagtgaaggaactgccttacttgtcttgcaatttgcgaaataagatttcttgtcttgttttttaagaaacaaccttgcatcccatatgtcttaccgagca 16601469  T
Q  205 agaaaacatccatgtattttcattttcttgagacataagtagcttcagagtaaaataatttaacctttgacnnnnnnnnggaagaaattagtttggttca 304  Q
    ||||| ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  16601468 agaaagcat-cttgtatttccattttcttgagacgtaagtagcttcagagtaaaataatttaacctttgacttttttctaaaagaaattagtttggttca 16601370  T
Q  305 ttgacttttaaactatctatatgtatcattagtgtgtatataattatcttaatcaattgtactaatctcaaattgcgaataagaaatgtctcaattcatg 404  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16601369 ttgacttctaaactatctatatgtatcattagtgtgtatatagttatcttaatcaattgtactaatctcaaattgcgaataaaaaatgtctcaattcatg 16601270  T
Q  405 attcttttgattgtattattcctatttcaacatttgaatgaatgaaattattttaattt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16601269 attcttttgattgtattattcctatttcaacatttgaatgaatgaaattattttaattt 16601211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14465495 - 14465552
Alignment:
Q  5 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggta 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14465495 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggta 14465552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 16605243 - 16605055
Alignment:
Q  78 caagacttgccaagcaaaaaagtaaagaagtgaagaaactgccttgcttgtcttgcaatttgcgaaataagatttcttgtcttgttttttaagaaacaac 177  Q
    |||||||| |||||||| ||| |||| |||||||| |||  ||||| ||| |||||| |||  |||| || |||||||||||||  | | |||||| | |    
T  16605243 caagactttccaagcaagaaattaaaaaagtgaaggaacctccttgtttgccttgcactttaagaaacaatatttcttgtcttgcatatcaagaaatagc 16605144  T
Q  178 cttgcatcccatatgtcttaacgagcaagaaaacatccatgtattttcattttcttgagacataagtagcttcagagtaaaataattta 266  Q
    ||||   ||||||||||||| ||||||||||| | ||| |||| || ||||||||||| |   || ||||||| |||||||||||||||    
T  16605143 cttgtggcccatatgtcttatcgagcaagaaatcctccttgtaattccattttcttgataagcaaatagcttctgagtaaaataattta 16605055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 13224983 - 13225040
Alignment:
Q  5 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggta 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13224983 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggta 13225040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 188416 - 188473
Alignment:
Q  5 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggta 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  188416 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcatcgccttggta 188473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 15006488 - 15006545
Alignment:
Q  5 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatcaccgccttggta 62  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  15006488 ctcagtcccagtgtggatgatcatcctctcggaccaactactgatcaccaccttggta 15006545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 7622663 - 7622701
Alignment:
Q  408 cttttgattgtattattcctatttcaacatttgaatgaa 446  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  7622663 cttttgattgtattattcttattttaacatttgaatgaa 7622701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 3426118 - 3426053
Alignment:
Q  200 gagcaagaaaacatccatgtattttcattttcttgagacataagtagcttcagagtaaaataattt 265  Q
    ||||||||||||  || ||||||| || |||||||||| | ||||||||||||| |||||| ||||    
T  3426118 gagcaagaaaaccgccttgtatttccactttcttgagaaacaagtagcttcagattaaaatgattt 3426053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 450
Target Start/End: Original strand, 16207931 - 16208047
Alignment:
Q  334 tagtgtgtatataattatcttaatcaattgtactaatctcaaattgcgaataagaaatgtctcaattcatgattcttttgattgtattattcctatttca 433  Q
    ||||| |||| ||| |||||| |||| ||||||| |||||||| |  ||||||||||||| ||||| ||| |||  ||||||||||| ||| |||||  |    
T  16207931 tagtgagtatttaactatctttatcatttgtactgatctcaaaatatgaataagaaatgtttcaatgcataatttctttgattgtatcattgctattcta 16208030  T
Q  434 acatttgaatgaatgaa 450  Q
     |||||||||| |||||    
T  16208031 gcatttgaatggatgaa 16208047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 34980603 - 34980537
Alignment:
Q  66 ccttgtgaactacaagacttgccaagcaaaaaagtaaagaagtgaagaaactgccttgcttgtcttg 132  Q
    |||||||  |||||||||||||||||||| |||||||| |||||||| ||   ||||||||||||||    
T  34980603 ccttgtgtcctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttgcttgtcttg 34980537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 45710634 - 45710732
Alignment:
Q  320 tctatatgtatcattagtgtgtatataattatcttaatcaattgtactaatctcaaattgcgaataagaaatgtctcaattcatgattcttttgattgta 419  Q
    |||| ||||||||||||||||||| ||  ||||||||||| ||||| |  ||| |||||| | || ||||||| | |||||||||| ||||| |||||||    
T  45710634 tctacatgtatcattagtgtgtatctagctatcttaatcacttgtaatggtcttaaattgtggatgagaaatgccccaattcatga-tctttcgattgta 45710732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 593308 - 593263
Alignment:
Q  5 ctcagtcccagtgtggctgatcatcctctcggaccagctactgatc 50  Q
    |||| ||||||  ||||||||||||||||||||||||||| |||||    
T  593308 ctcaatcccagattggctgatcatcctctcggaccagctattgatc 593263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 31795141 - 31795177
Alignment:
Q  75 ctacaagacttgccaagcaaaaaagtaaagaagtgaa 111  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  31795141 ctacaagacttgccatgcaaaaaagtaaacaagtgaa 31795177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University